Archive for July, 2022

The Built Environment

Posted in Architecture, Maynooth on July 22, 2022 by telescoper
The New Building

It seems that after long delays, the new building on Maynooth University’s North Campus is finally finished. Or at least I think it is. I haven’t been inside yet. I don’t know who are what is going to be housed there, except that the President’s Office is going to be there. The remaining space might nevertheless do something to relieve the shortage of office accommodation on campus.

It was only just under four years ago that I saw this sign marking the proposed site of the new building.

Less than a year later, work had started:

This was in January 2020:

A couple of months later the site was surrounding by fencing decorated by an artist’s impression of the new building:

Notice that the plan was to open in “Early 2021”. Unfortunately the pandemic intervened and building stopped. This was at the end of March.

When building work eventually resumed there were further delays due to difficulties, e.g., in procuring materials. We were supposed to have use of this building for the last two open days on campus but that didn’t happen. It will be hopefully be ready for the new academic year, though. The finished product even looks a bit like the artist’s picture!

The building work has at times caused serious problems with noise in the Science Building, where my office is located, but not any more. Better is the end of a thing than the beginning thereof.

New Publication at the Open Journal of Astrophysics

Posted in Open Access, The Universe and Stuff with tags , , , , , , , on July 22, 2022 by telescoper

It seems we’re on a bit of a roll at the Open Journal of Astrophysics as we have yet another new paper for me to announce. I think with the end of teaching quite a few authors are finding time to make their revised versions (which I should also be doing, come to think of it….)

Anyway the new paper, published yesterday, is the 11th paper in Volume 5 (2022) and the 59th in all. The latest publication is entitled “Bayesian error propagation for neural-net based parameter inference” and is written by Daniela Grandón of the University of Chile and Elena Sellentin of Leiden University.

It being mainly about the application of parameter inference to cosmology, this is another paper in the Instrumentation and Methods for Astrophysics folder.

Here is a screen grab of the overlay which includes the  abstract:

 

You can click on the image to make it larger should you wish to do so. You can find the arXiv version of the paper here.

Life and Chemical Imbalances

Posted in Biographical, Cardiff, Maynooth, Mental Health with tags , , , , , on July 21, 2022 by telescoper

Although it has weighed on my mind in recent weeks, and I have mentioned it on this blog a couple of times, I’ve managed to avoid writing too much about the fact that exactly ten years ago I was languishing in the high-dependency unit of a psychiatric hospital. Today I saw that there’s an article doing the rounds about mental health issues so I thought I’d use it as a pretext for getting some of the memories of that time off my chest.

The article I mentioned above has the rather misleading title Depression is probably not caused by a chemical imbalance in the brain – new study. What the article argues is that there isn’t a simple cause-and-effect relationship between depression and the chemical serotonin. There may well be a biochemical explanation of depressive illness that involves serotonin, but it’s obviously very complicated. That shouldn’t surprise anyone. Very few things in neuroscience are simple.

Unfortunately some people are misrepresenting the piece by claiming that it proves that a widely-used class of anti-depressant drugs known as Selective Serotonin Reuptake Inhibitors (SSRIs; the best-known of which, Fluoxetine, is known by the trade name Prozac). This class also includes Citalopram and Paroxetine (trade name: Seroxat), both of which I have been on. The latter is not available on the National Health Service through a General Practitioner, but must instead be prescribed by a consultant psychiatrist because of rather serious side-effects.

I refer you to an explanatory article Dean Burnett who explains that nobody really knows how these SSRI anti-depressants work, and why it is not surprising that they can have unexpected side effects. I hope that the articles I mentioned above help make it clearer what is involved being on medication of this sort. These drugs are in widespread use, but ignorance about them is spread even wider.

Anti-depressants are not only prescribed for the treatment of clinical depression but also for, e.g., anxiety disorder, panic disorder, and post-traumatic stress disorder. It is for these things rather than depression per se that I have taken SSRIs. Nobody really knows why anti-depressants work against depression (although there is clinical evidence that they do), and there is even less understanding why (and, in some cases, evidence that) they are effective for these other conditions. Like many treatments they seem to have been discovered empirically, by trial and error.

As Dean Burnett explains in his article, SSRIs work by increasing the level of Serotonin (a monoamine neurotransmitter). However, taking an SSRI increases the level of Serotonin almost immediately whereas the effect on depression takes weeks to register. While low Serotonin levels may play a part in depressive illness, they’re clearly not the whole story.

Ten years ago, in the summer of 2012, I experienced awful problems largely as a result of trying to come off the medication I had been on since the previous autumn. The withdrawal symptoms then included shaking fits, insomnia, visual and auditory hallucinations, nausea, and hypervigilance.

The effect of this extreme collection of withdrawal symptoms was that I didn’t eat or sleep for a couple of weeks. My mental and physical health deteriorated steadily until my GP referred me to a psychiatric hospital just outside Cardiff. When I arrived there they took one look at me and put me in a high-dependency unit, under close supervision.

I think they thought I was suicidal but I really wasn’t. I was just so exhausted that I didn’t really care what happened next. I was however put on a kind of `suicide watch’, the reason for this being that, apparently, even while sedated, I kept trying to pull the tube out of my arm. I was being fed via a drip because I was ‘Nil by Mouth’ by virtue of uncontrollable vomiting. I guess the doctors thought I was trying to sabotage myself, but I wasn’t. Not consciously anyway. I think it was probably just irritating me. In fact I don’t remember doing it at all, but that period is very much a blur altogether. Anyway, I then found myself in physical restraints, so I couldn’t move my arms, to stop me pulling the tube out.

Those days are painful to recall but I was eventually moved to a general ward and shortly after that I was deemed well enough to go home. Fortunately, I recovered well enough to return to work (after taking a short break in Copenhagen). I signed up for 6 weeks of talking therapy. I had to wait some time before a slot became available, but had appointments once a week after that.

At the end of the summer of 2012, I was offered the job of Head of the School of Mathematical and Physical Sciences at Sussex University. I moved from Cardiff to Brighton in early 2013 to take up this new position. I hadn’t been there for long when my old problem returned. The stress of the job obviously played a role in this, and I soon realized that I couldn’t keep going without help from medication. It was then that I was tried out on Paroxetine, the dose being gradually increased until I was at the maximum recommended level (60mg daily).

While this medication was effective in controlling the panic disorder, it had some unpleasant side-effects, including: digestive problems; dizziness; difficulty in concentrating; fatigue; and the weirdest of all, a thing called depersonalisation, which I still experience (in a relatively mild form) from time to time.

I found myself living a kind of half-life, functioning reasonably well at work but not having the energy or enthusiasm to do very much else outside of working hours. Eventually I got fed up with it. I felt I had to choose between staying in my job as Head of School (which meant carrying on taking the drugs indefinitely) or leaving to do something else (which would mean I might be able to quit the drugs). I picked the latter. The desire to come off medication wasn’t the only factor behind my decision to stand down from my job at Sussex, but it played a big part.

I knew however that Paroxetine is associated with notoriously difficult withdrawal symptoms so, mindful of my previous experience in 2012, I followed the medical instructions to the letter, gradually cutting down my dose over a couple of months during the course of the Autumn in 2016. I still had significant withdrawal symptoms, especially the insomnia, but not as bad as before.

In 2016 had no idea that I would move to Ireland in 2017. I’m glad to say, though, that despite the isolation and stress caused by the pandemic, and workload issues generally, I’ve managed without any form of anti-depressants since then, though it hasn’t always been easy. Let’s just say that I am greatly looking forward to reaching the end of my term as Head of Department of Theoretical Physics at the end of next month…

The Earliest Galaxy we’ve seen?

Posted in Astrohype, The Universe and Stuff with tags , , , on July 20, 2022 by telescoper

The red smudge in the centre of this image is thought to be a galaxy with a redshift of around z=13, as seen by the NIRCam instrument on the James Webb Space Telescope. This redshift estimate is based on photometry so the object remains a candidate rather than a confirmed high-redshift galaxy, but if confirmed spectroscopically this would be the highest-redshift galaxy yet observed.

For more details on the observations and their implications see the preprint on arXiv here. It’s interesting (and challenging) that there are such bright galaxies at such an early stage of cosmic evolution, assuming of course that the redshift is correct. Photometric redshift estimates have been wrong before.

If we take the estimated redshift at face value and adopt the standard cosmological model, the lookback time to this galaxy (GLASS-z13) is about 97.6% of the current age of the Universe so we’re seeing it as it was just 330 million years after the Big Bang. It could therefore be the earliest galaxy we have seen. It isn’t very accurate to say that it is the oldest galaxy we’ve seen, as we are probably seeing it as it was when it was very young.

These observations come from JWST Early Science Release Programmes so are just a taster of what is to come. No doubt we’ll hear much more about high-redshift galaxies from JWST in future and there’s every chance that they will change our view of the high-redshift Universe in dramatic ways.

I’ll just mention here that I’m old enough to remember going to conferences where “high redshift” meant z=0.5! In those days the highest redshift objects were quasars, but they have long since been overtaken.

The Pianist – Lyubov Popova

Posted in Art with tags , , on July 19, 2022 by telescoper
Lyubov Popova, Public domain, via Wikimedia Commons

Lyubov Popova, 1914, oil on canvas, 106.5 x 88.7 cm, National Gallery of Canada.

A Clarivate Apology

Posted in Open Access with tags , , on July 19, 2022 by telescoper

Well, it seems that my recent post about Impact Factors has had some effect. Today I received an email from Clarivate, the salient part of which is appended below. I applied for inclusion on the Web of Science Collection in April 2021, so they have sat on this request for over a year.

Now I have to start the process  all over again. Sigh. I’m taking a wild guess here but I wonder if access to the Web of Science Publisher Portal might require the payment of a hefty subscription, so only big commercial publishers can afford it?

I suspect If I hadn’t posted about this on social media they would have ignored my submission request indefinitely.

To think so many people take this company seriously….

–0–

We are contacting you regarding the evaluation of the Open Journal of Astrophysics for the Web of Science Core Collection and following up from a recent post on social media.

Unfortunately we have not been able to evaluate your journal to this date due to the large amount of journal submissions we are continuously receiving and the implementation of new internal management systems. We are taking several actions to improve the efficiency of the editorial process, one of them is the migration of our submission platform to the Web of Science Publisher Portal. The Portal allows publishers to securely log in and submit journals for inclusion in the Web of Science Core Collection and provides a way to view the status of all journals submitted.

All journals previously submitted using the Journal Submission Form on the Master Journal List that have not received a decision regarding inclusion in the Web of Science Core Collection, have to be re-submitted through the Web of Science Publisher Portal; that is the case of the Open Journal of Astrophysics, which needs to be re-submitted. Please remember that only publishers can submit journals through the portal.

 

Dizzy on the French Riviera

Posted in Jazz with tags , , , on July 18, 2022 by telescoper

Today’s high temperatures provide me with an excuse to post my favourite hot-weather music, the 1962 album Dizzy on the French Riviera. Can this really have been recorded 60 years ago?

Anyway, the album features the great Dizzy Gillespie Quintet of that time which was heavily influenced by Latin American sounds and had Argentinian Lalo Schifrin on piano, a man best known as a prolific composer of film and TV scores. The band also featured Leo Wright, a very under-rated saxophonist and flautist, and is augmented on some of the tracks by various percussionists. I have lost track of the number of times I’ve listened to the happy seaside sounds of children playing leading into to the opening track No More Blues

Heatwave

Posted in Biographical, Maynooth with tags , on July 18, 2022 by telescoper

The extremely hot weather currently engulfing much of Europe has reached Maynooth, although the temperature here is around 30°C, which is warm by the standards of Ireland but not as extreme as the >40ºC predicted for the UK today and on the continent. Maynooth is in the part of Ireland where temperatures are predicted to be highest.

I’m told that a “heatwave” is defined in Ireland as four consecutive days with temperatures above 25ºC. That is relatively cool by some standards but not for this temperate island. Still, it looks like it will break by Wednesday.

I don’t function very well in hot weather so I’m staying indoors where it is relatively cool (although we have no air conditioning). The highest temperature I’ve ever been in was 48ºC in Aswan, Southern Egypt, where I was on holiday in the 90s. That was different though as it is basically a desert climate and was a very dry heat. I found as long as I drank plenty of water I felt OK. A few summers later when I spent a few days in New Orleans it was barely 30ºC but so unbearably humid that I found it impossible. Humidity in Maynooth today is about 40% so it’s not too bad.

Before coming to work this morning I put out lots of water in the garden for the birds, who need to drink as well as bathe. The local robin has been very vocal over the last few days as if to demand that I keep the water supply refreshed. I’m convinced this bird thinks it owns my garden and that I am its servant. Elsewhere in the garden I moved my dwarf fig to a shadier spot, it being rather frazzled.

I checked on Maynooth University Library Cat’s bowl on my way too, though he himself was nowhere to be seen, no doubt sheltering in a cool spot somewhere.

The thermoelectric wine cooler in my kitchen has been struggling noisily to maintain cellar temperature (12-14 ºC) . It’s quite old so this heatwave might well finish it off. Let’s hope the same isn’t true for too many humans…

The All-Ireland Senior Hurling Championship Final

Posted in GAA with tags , , , , on July 17, 2022 by telescoper

Today’s the day! Kilkenny v Limerick from Croke Park for the All-Ireland Senior Hurling Championship Final. Over 80,000 spectators will watch this in Croke Park as well as millions around the world. Let’s hope it’s a good one.

Half Time: Kilkenny 0-16 Limerick 1-17

Reasonably comfortable for Limerick who have been ahead since the 2nd minute. Can Kilkenny fight back in the 2nd half? I’m glad for the sake of the players that it’s “only” 27 °C at Croke Park this afternoon and not even hotter!

Full Time: Kilkenny 2-26 Limerick 1-31

So Limerick have won their 3rd All-Ireland Championship in a row by just two points.

Kilkenny scored two goals in the second half to level the scores at which point Limerick seemed a bit ragged, but Limerick pulled themselves together held on for the victory in what was a thrilling second half. Hurling is not a game for faint hearts but alongside the physicality of the game there is an astonishing level skill: the accuracy of the long-range shooting is quite phenomenal.

Congratulations to Limerick, deserved winners, and commiserations to Kilkenny who made a fantastic game of it. What a magnificent final.

New Publication at the Open Journal of Astrophysics

Posted in Open Access, The Universe and Stuff with tags , , , on July 17, 2022 by telescoper

Today is ten years to the day that I wrote the blog post that first proposed setting up the Open Journal of Astrophysics. It took a bit longer than I’d expected to get it going. The prototype site opened at the end of 2015 but owing to personal issues the project didn’t get going in full until after I moved to Maynooth in 2017.

It couldn’t have happened without enormous help from Arfon Smith, Chris Lintott, Adam Becker, Robert Simpson, Stuart Lynn and Mark Rohloff so many thanks to them for assistance in getting it off the ground. I also thank the staff at Maynooth University Library, especially Fiona Morley-Clarke, for their support and assistance. I also acknowledge financial support from the Gordon and Betty Moore Foundation.

I’d also like to thank the Editorial Team at OJAp, all unpaid volunteers, for their efforts and of course to all the authors who have trusted their research findings what was, at least at the start, an experimental venture.

Now seems an appropriate time to announce yet another new publication in the Open Journal of Astrophysics! This one, published last week, is the 10th paper in Volume 5 (2022) and the 58th in all.

The latest publication is entitled “V889 Her: abrupt changes in the magnetic field or differential rotation?” and is written by Teemu Willamo (Helsinki), Thomas Hackman (Helsinki), Jyri J. Lehtinen (Turku), Maarit Korpi-Lagg (Aalto) and Oleg Kochukhov (Uppsala). The first four of these are based in Finland and the last in Sweden.

This is another paper in the Solar and Stellar Astrophysics folder; the subject of the paper V889 Herculis is a young and very active dwarf star with some intriguing properties.

Here is a screen grab of the overlay which includes the (very short) abstract:

You can click on the image to make it larger should you wish to do so. You can find the arXiv version of the paper here.