Archive for the Open Access Category

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , on March 10, 2023 by telescoper

It’s time to announce yet another new paper at the Open Journal of Astrophysics.

The latest paper is the 9th paper in Volume 6 (2023) and the 74th in all. This one is another one for the folder marked Instrumentation and Methods for Astrophysics. The title is “panco2: a Python library to measure intracluster medium pressure profiles from Sunyaev-Zeldovich observations”. The code described in the paper The Python code is available on GitHub and there isextensive technical documentation to complement this paper.

The authors are Florian Kéruzoré (Argonne National Laboratory, USA, and the University of University of Grenoble, France), Frédéric Mayet, Emmanuel Artis, Juan-Francisco Macías-Pérez, Miren Muñoz-Echeverría and Laurence Perotto (all of the University of Grenoble, France) and Florian Ruppin (of the University of Lyon, also in France).

Here is a screen grab of the overlay which includes the  abstract:

 

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

Academic Publishing as Exploitation

Posted in Open Access, Politics with tags , , , , on March 3, 2023 by telescoper

In yesterday’s post I asked the question whether anyone actually believes that it costs it costs £2310 to publish a scientific article online? I also posted the question on the Open Journal of Astrophysics Twitter account:

https://twitter.com/OJ_Astro/status/1631022314169987077?s=20

Only a few people responded to that question with a “yes”. Coincidentally all of them appear to be employed by the academic publishing industry. These people insist that the big publishers bring value to scientific papers. They don’t. Authors and referees do all the things that add value. What publishers do is take that value and turn it into its own profits. The fact that enormous profits are made out of this process in itself demonstrates that what the scientific community is being charged is nothing whatever to do with cost.

This reminds me of many discussions I had in my commie student days about surplus value, a concept explored in great detail by Karl Marx, in Das Kapital. According to the wikipedia page, the term “refers roughly to the new value created by workers that is in excess of their own labour-cost and which is therefore available to be appropriated by the capitalist, according to Marx; it allows then for profit and in so doing is the basis of capital accumulation.”

Engels is quoted there as follows:

Whence comes this surplus-value? It cannot come either from the buyer buying the commodities under their value, or from the seller selling them above their value. For in both cases the gains and the losses of each individual cancel each other, as each individual is in turn buyer and seller. Nor can it come from cheating, for though cheating can enrich one person at the expense of another, it cannot increase the total sum possessed by both, and therefore cannot augment the sum of the values in circulation. (…) This problem must be solved, and it must be solved in a purely economic way, excluding all cheating and the intervention of any force — the problem being: how is it possible constantly to sell dearer than one has bought, even on the hypothesis that equal values are always exchanged for equal values?

Marx’s solution of this economical conundrum was central to his theory of exploitation:

…living labour at an adequate level of productivity is able to create and conserve more value than it costs the employer to buy; which is exactly the economic reason why the employer buys it, i.e. to preserve and augment the value of the capital at his command. Thus, the surplus-labour is unpaid labour appropriated by employers in the form of work-time and outputs.

In the context of academic publishing, the workers are scientific researchers and the employers are the publishers. The workers not only produce the science in the first place, but also carry out virtually all of the actions that the employers claim add value. The latter are simply appropriating the labour of the former, which is exploitation. It needs to stop.

 

Article Processing Charges at the Royal Astronomical Society

Posted in Open Access with tags , , , on March 2, 2023 by telescoper

As it was foretold, the Royal Astronomical Society has now officially announced that all its journals will be moving to Gold Open Access. The only thing that surprised me about this is the speed that it will be done – from January 1st 2024. The announcement confirms that the “rumour” I reported in 2020 was true (as I knew it was, given the reliability of the source). I did, however, think the timescale would be “within a few years” and it turns out to be much shorter than that.

For the journal of most relevance to myself, Monthly Notices of the Royal Astronomical Society (MNRAS) this decision means that authors will have to pay an Article Processing Charge (APC) at the (suitably astronomical) level of £2310 for each paper (although there will be exemptions in certain situations). Does anyone genuinely believe that it costs that much to publish an article online? Really?

I did actually laugh out loud when I saw the spin the RAS are trying to put on this decision:

The RAS is excited to be a key contributor to the open science movement, helping to drive discoverability and change.

Au contraire. Gold Open Access a serious hindrance to the open science movement, as it involves hugely inflated costs to the authors in attempt to protect revenue in the face of declining subscription income. Switching from a ‘fleece-the-libraries’ model to a ‘fleece-the-authors’ alternative can in no way be regarded as a progressive move.

Other notable astronomy-related journals, such as the Astrophysical Journal (ApJ) and Astronomy & Astrophysics (A&A), have levied “page charges” (effectively APCs by another name) for as long as I can remember, though in the latter case there is a waiver for researchers in “member” countries. ApJ and other journals also have a waiver scheme for those who cannot afford to pay. For those who have to pay, the fee is usually about $100 per page. For a long time MNRAS was the exception and indeed the only feasible choice for people who don’t have access to funding to cover page charges, including many in the developing world. More recently, however, MNRAS introduced a charge for longer papers: £50 per page over 20 pages, so a paper of 21 pages costs £50 and one of 30 pages costs £500, etc. Now there will be a flat fee of £2310 per paper.

It is true that some institutions will pay the APC on behalf of their authors, but that is hardly the point. If institutions have cash to pay for astronomy publications to be open access then they would do far more good to the research community by giving it to the arXiv rather than to the publishing industry. When authors themselves see how much they have to pay to publish their work, many will realize that it is simply not worth the money. (I refuse to pay any APC on principle.)

The Twitter feed for the Open Journal of Astrophysics (OJAp) was buzzing all day yesterday with negative reactions to the RAS announcement. Obviously I am biased in this matter, but I do encourage those thinking of switching to give it a try. The RAS has played into the hands of OJAp, which publishes papers (online only) in all the areas of Astrophysics covered by MNRAS, and more, but is entirely free both for authors and readers. The annual running costs of OJAp are substantially less than one APC at the level proposed by MNRAS.

The comments I have seen brought this image to my mind:

(The allusion to sharks is not accidental.)

The question for the Royal Astronomical Society, and indeed the other learned societies that fund their activities in a similar way, is whether they can find a sustainable funding model that takes proper account of the digital publishing revolution. If their revenue from publishing does fall, can they replace it? And, if not, in what form can they survive? I’d like to think that future operating models for such organizations would involve serving their respective communities, rather than fleecing them.

The Gaming of Citation and Authorship

Posted in Open Access with tags , , on February 22, 2023 by telescoper

About ten days ago I wrote a piece about authorship of scientific papers in which I pointed out that in astrophysics in cosmology it is often the case that many “authors” (i.e. people listed in the author list) of papers (largely those emanating from large consortia) often haven’t even read the paper they are claiming to have written.

I now draw your attention to a paper by Stuart Macdonald, with the abstract:

You can find the full paper here, but unfortunately it requires a subscription. Open Access hasn’t reached sociology yet.

The paper focuses on practices in medicine, but it would be very wrong to assume that the issues are confined to that discipline; others have already fallen into the mire. I draw your attention in particular to the sentence:

Many authors in medicine have made no meaningful contribution to the article that bears their names, and those who have contributed most are often not named as authors. 

The first bit certainly also applies to astronomy, for example.

The paper does not just discuss authorship, but also citations. I won’t discuss the Journal Impact Factor further, as any sane person knows that it is daft. Citations are not just used to determine the JIF, however – citations at article level make more sense, but are also not immune from gaming, and although they undoubtedly contain some information, they do not tell the whole story. Nor will I discuss the alleged ineffectiveness of peer review in medicine (about which I know nothing). I will however end with one further quote from the abstract:

The problem is magnified by the academic publishing industry and by academic institutions….

So many problems are…

The underlying cause of all this is that the people in charge of academic institutions nowadays have no concept of the intrinsic value of research and scholarship. The only things that are meaningful in their world are metrics. Everything we do now is reduced to key performance indicators, such as publication and citation counts. This mindset is a corrupting influence encourages perverse behaviour among researchers as well as managers.

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , on February 20, 2023 by telescoper

It’s time to announce yet another new paper at the Open Journal of Astrophysics Open Journal of Astrophysics. This was published last week (on 15th February 2023) but there was a slight delay in getting the DOI activated and all the metadata registered so I waited until that was done before announcing the paper here.

The latest paper is the 8th paper in Volume 6 (2023) as well as the 73rd in all. This one is another one for the folder marked Cosmology and Nongalactic Astrophysics. The title is “The N5K Challenge: Non-Limber Integration for LSST Cosmology”. The paper is about ways of avoiding using the ubiquitous Limber Approximation which, I discovered this morning, is now 70 years old, Nelson Limber’s original paper on the subject having been published in January 1953.

The lead author of the paper is Danielle Leonard of Newcastle University and there are ten co-authors from around the world in countries including UK, USA, Brazil, Germany, Spain, Switzerland and France on behalf of the LSST Dark Energy Science Collaboration.

Here is a screen grab of the overlay which includes the  abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , on February 14, 2023 by telescoper

It’s time to announce another new paper at the Open Journal of Astrophysics. This was published yesterday (13th February 2023). The rate of submissions has increased greatly in recent weeks, so  I am thinking seriously about switching to a weekly round-up on here instead of individual posts, but for the meantime I’ll carry on.

The latest paper is the 7th paper in Volume 6 (2023) as well as the 72nd  in all. This one is another one for the folder marked Instrumentation and Methods for Astrophysics. The title is “FRBSTATS: A web-based platform for visualization of fast radio burst properties”. This paper describes a software platform which can be accessed directly here. If you want to read more about Fast Radio Bursts, you can look here.

The authors of the paper are Apostolos Spanakis-Misirlis, who gives his affiliations as the University of Piraeus and University of Crete (Greece), and Cameron Van Eck of ANU in Canberra, Australia

Here is a screen grab of the overlay which includes the  abstract:

 

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

Institutional Affiliations and the Open Journal of Astrophysics

Posted in Open Access with tags , on February 13, 2023 by telescoper

This is a copy of a blog post I put up in the Open Journal of Astrophysics website at the weekend.

The Research Organization Registry (ROR) is a community-led database that aims to provide a persistent identifier for every research organization in the world. In other words, it aims to do for institutions what ORCID does for individual researchers.

Scholastica has recently introduced a facility to allow authors to include an ROR tag for authors when they submit a paper. We encourage authors of papers submitted to the Open Journal of Astrophysics to do this. Institutions and organizations may require this in due course, as some do with ORCID, so it would be good to get into practice!

For example the ROR entry for NUI Maynooth is:

https://ror.org/048nfjm95

You can find your institutions ROR identifier here.

Not all corresponding authors of papers to OJAp supply details of institutional affiliations when they submit papers to us., presumably because it takes a while enter the relevant data. We can only supply the metadata to Crossref that authors supply to us. The more authors include the better, of course, but the ROR tag supplies a unique persistent identifier that is sufficient to pinpoint the relevant organization, so it is undoubtedly useful. Obviously, however, we can only pass this information on if authors supply it to us.

What should it mean to be an author of a scientific paper?

Posted in Open Access, The Universe and Stuff with tags , , , on February 12, 2023 by telescoper

The implementation of artificial intelligence techniques in tools for generating text (such as ChatGPT) has caused a lot of head-scratching recently as organizations try to cope with the implications. For instance, I noticed that the arXiv recently adopted a new policy on the use of generative AI in submissions. One obvious question is whether ChatGPT can be listed as an author. This has an equally obvious answer: “no”. Authors are required to acknowledge the use of such tools when they have used them in writing a paper.

One particular piece of the new policy statement caught my eye:

…by signing their name as an author of a paper, they each individually take full responsibility for all its contents, irrespective of how the contents were generated. If generative AI language tools generate inappropriate language, plagiarized content, biased content, errors, mistakes, incorrect references, or misleading content, and that output is included in scientific works, it is the responsibility of the author(s).

The first sentence of this quote states an obvious principle, but there are situations in which I don’t think it is applied in practice. One example relates to papers emanating from large collaborations or consortia, where the author lists are often very long indeed, sometimes numbering in the thousands. Not all the “authors” of such papers will have even read the paper, so do they “each individually take full responsibility”? I don’t think so. And how can this principle be enforced as policy?

All large consortia have methods for assigning authorship rights as a way of assigning credit for contributions made. But why does “credit” have to mean “authorship”? Papers just don’t have thousands of authors, in the meaningful sense of the term. It’s only ever a handful of people who actually do any writing. That doesn’t mean that the others didn’t do any work. The project would probably not have been possible without them. It does mean, however, that pretending that they participated in writing the article that describes the work isn’t be the right way to acknowledge their contribution. How are young scientists supposed to carve out a reputation if their name is always buried in immensely long author lists? The very system that attempts to give them credit at the same renders that credit worthless.

As science evolves it is extremely important that the methods for disseminating scientific results evolve too. The trouble is that they aren’t. We remain obsessed with archaic modes of publication, partly because of innate conservatism and partly because the lucrative publishing industry benefits from the status quo. The system is clearly broken, but the scientific community carries on regardless. When there are so many brilliant minds engaged in this sort of research, why are so few willing to challenge an orthodoxy that has long outlived its usefulness.

In my view the real problem is not so much the question of authorship but the very idea of the paper. It seems quite clear to me that the academic journal is an anachronism. Digital technology enables us to communicate ideas far more rapidly than in the past and allows much greater levels of interaction between researchers. The future for many fields will be defined not in terms of “papers” which purport to represent “final” research outcomes, but by living documents continuously updated in response to open scrutiny by the community of researchers. I’ve long argued that the modern academic publishing industry is not facilitating but hindering the communication of research. The arXiv has already made academic journals redundant in many of branches of  physics and astronomy; other disciplines will inevitably follow. The age of the academic journal is drawing to a close. Now to rethink the concept of “the paper”.

In the meantime I urge all scientists to remember that by signing their name as an author of a paper, they individually take full responsibility for all its contents. That means to me that at the very least you should have read the paper you’re claiming to have written.

Action Plan for Diamond Open Access

Posted in Open Access with tags on February 10, 2023 by telescoper

I came across an interesting document concerning Diamond Open Access journals and thought I’d share it here. These are journals of the good sort that charge neither authors nor readers. In particular they do not charge exorbitant Article Processing Charges, like Open Access journals of the bad sort do. The Open Journal of Astrophysics is a “diamond journal“.

The document describes an initiative (“Action Plan”) that aims for a scholarly publishing infrastructure that is equitable, community-driven, academic-led and -owned. This will enable the global research community to take charge of a scholarly communication system by and for research communities. It therefore welcomes all researchers, organisations, disciplines, and journals who share its vision and ethos to endorse it.

You can download the document as a PDF file here.

You might also want to endorse the plan, or persuade your organization/university/research lab to do so. You can do that here.

Endorsing the Action Plan does not entail any financial commitment, but makes you part of the Diamond Open Access community and engages you in the creation of conditions that will strengthen the sector. An overview of endorsing persons and organisations will be publicly available.

Perusing the list of endorsing institutes, I see Cardiff University is in there, but sadly not Maynooth (yet…)

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , on February 8, 2023 by telescoper

We’re on a bit of a roll at the Open Journal of Astrophysics and it’s time to announce yet another paper. We actually published this one yesterday (7th February 2023), which makes it two in two days. I don’t think we’ll keep up that rate but we have seen a big increase in submissions recently and these are working their way through the system very nicely. We aim to publish accepted papers within a day of the revised version appearing on arXiv.

The latest paper is the 6th paper in Volume 6 (2023) as well as the 71st in all. This one is another one for the folder marked Cosmology and Nongalactic Astrophysics. The title is “Almanac: Weak Lensing power spectra and map inference on the masked sphere”. The nub of the problem addressed by this paper is that the usual statistical analysis of data presented in projection on the sky involves spherical harmonics, which are orthogonal functions on the celestial sphere, but when the sky is not completely covered (i.e. part of it is masked), these functions are not orthogonal on what remains.

The authors of this paper are Arthur Loureiro (University of Edinburgh, UK), Lorne Whiteway (University College London, UK), Elena Selentin (Leiden University, NL), Javier Silva Lafaurie (Leiden University, NL), Andrew Jaffe (Imperial College London, UK) and Alan Heavens (Imperial College London, UK)

Here is a screen grab of the overlay which includes the  abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.