Archive for the Open Access Category

Accessibility on arXiv

Posted in Education, Open Access with tags , , , , , on January 20, 2023 by telescoper

There’s an interesting paper on the arXiv that came out before Christmas, but which I’ve only just seen, about attempts to make arXiv content more accessible. Here is the abstract:

The research content hosted by arXiv is not fully accessible to everyone due to disabilities and other barriers. This matters because a significant proportion of people have reading and visual disabilities, it is important to our community that arXiv is as open as possible, and if science is to advance, we need wide and diverse participation. In addition, we have mandates to become accessible, and accessible content benefits everyone. In this paper, we will describe the accessibility problems with research, review current mitigations (and explain why they aren’t sufficient), and share the results of our user research with scientists and accessibility experts. Finally, we will present arXiv’s proposed next step towards more open science: offering HTML alongside existing PDF and TeX formats. An accessible HTML version of this paper is also available at https://info.arxiv.org/about/accessibility_research_report.html

I think this is well worth reading.

This reminds me a bit of the experiences I’ve had teaching theoretical physics to blind and partially-sighted students. Years ago this used to involve making braille copies of notes, but there are now various bits of software to help such people manage LaTeX both for creating and reading documents. In particular there are programs that can read Latex documents (including formulae and equations) which means that if a lecturer can supply LaTeX source version of their notes the student can hear them spoken out loud as well as make their own annotations/corrections. While HTML might be better for some fields, I wonder if physicists and other people in disciplines that make heavy use of mathematics might prefer to use the LaTeX source code which is already downloadable from arXiv?

I’d be interested in views on this through the comments!

ScienceCast and arXiv

Posted in Open Access with tags , , on January 15, 2023 by telescoper

Browsing the arXiv blog, as one does from time to time, I saw an item about ScienceCast and arXiv which I think is worth highlighting here. I wasn’t aware of ScienceCast before seeing the arXiv blog entry so perhaps some readers of this blog hadn’t either.

According to its own website,

ScienceCast provides a website where researchers can create explainer videos in a collaborative space and receive feedback on their work from other researchers through blog posts and chat functions. The platform also provides the ability for users to post datasets supporting the researcher’s work so that the work can be verified by reference to its data.

Although I haven’t used it, the first of these features seems very nice, allowing users to develop video explainers for science projects with feedback from collaborators. This will be of interest to people wanting to make their work a little more accessible and those, especially at the early career stage, who would like advice on video presentations. The second feature may be of less interest to astrophysicists, who already have platforms for sharing data and whose data sets are often very large, but it might work for smaller examples.

Anyway, the new feature from arXivLabs that the arXiv blog post is about allows users to include ScienceCast material directly on the arXiv. Here’s how it looks:

Activating the ScienceCast feature using the slider allows one to see any content there directly on arXiv. Which is nice. I’ll be interested to see what the uptake is like. I may even play around with it myself, although that will have to wait until I’ve finished marking examinations…

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , on January 12, 2023 by telescoper

Time to announce another new paper at the Open Journal of Astrophysics. This one was published officially on 9th January 2023. The latest paper is the second paper in Volume 6 (2023) as well as the 67th in all. This one is in the Astrophysics of Galaxies folder.

The latest publication is entitled “Wide Binaries as a Modified Gravity test: prospects for detecting triple-system contamination” and the authors – Dhruv Manchanda, Will Sutherland Charalambos Pittordis – are all based at Queen Mary, University of London.

Here is a screen grab of the overlay which includes the  abstract:

 

 

You can click on the image to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , on January 7, 2023 by telescoper

Continuing the process of catching up with business at the Open Journal of Astrophysics, here is the first paper of 2023. This one was accepted before Christmas but the final version only appeared on arXiv after the holiday and was published officially on 4th January 2023.

The latest paper is the first paper in Volume 6 (2023) as well as the 66th in all. It’s yet another in the Cosmology and Non-Galactic Astrophysics folder.

The latest publication is entitled “It takes two to know one: Computing accurate one-point PDF covariances from effective two-point PDF models“. This is a British-French-German collaboration led by Cora Uhlemann of Newcastle University with co-authors  Oliver Friedrich, Aoife Boyle, Alex Gough, Alexandre Barthelemy, Francis Bernardeau, and Sandrine Codis.

This is such an interesting paper that we discussed it at our cosmology journal club at Maynooth University a while ago when it first appeared on arXiv and reading it again since then has suggested a nice project to me!

Anyway, here is a screen grab of the overlay which includes the  abstract:

 

 

You can click on the image to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , on January 5, 2023 by telescoper

I’ve been catching up on publishing matters over the past day or so, including dealing with a bit of a backlog generated by the Christmas break. The Open Journal is run entirely by volunteers and we all need some time off at some point.

To start with I’m delighted to be able to announce the last paper of 2022 at the Open Journal of Astrophysics.  The latest paper is the 17th paper in Volume 5 (2022) as well as the 65th in all. It’s yet another in the Cosmology and Non-Galactic Astrophysics folder.

The latest publication is entitled “The Cosmic Graph: Optimal Information Extraction from Large-Scale Structure using Catalogues“. It is written by a distinguished collection of cosmologists from around the world (and Alan Heavens).

Anyway, here is a screen grab of the overlay which includes the  abstract:

 

You can click on the image to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

Here is a bigger version of the image from the paper used on the overlay:

 

 

Code and a tutorial for the analysis and relevant software can be found here .

On the Multiple Publication of Academic Research

Posted in Open Access with tags , , , on November 26, 2022 by telescoper

The topic came up in a recent conversation of the ethical issues surrounding what is sometimes erroneously called self-plagiarism, but is more accurately called duplicate publication (or multiple publication or even redundant publication). This refers to the situation in which an author publishing their own intellectual material (specifically research results) more than once in different journals or other media. This is distinct from plagiarism, which involves an author publishing someone else’s intellectual material without attribution. It is also distinct from copyright violation, which can occur if the author tries to re-use material already published in a journal that has retained the copyright; the solution in that case is simply not to publish in a journal that does that.

Publication practice differs widely in different academic fields so in what follows I’ll concentrate on what applies in Physics & Astronomy. Here there is one type of publication, the Conference Proceedings, in which papers are often near-duplicates of others. That is because speakers tend to give the same or very similar talks at different conferences, and also tend to recycle material when writing up their contributions. I see nothing particularly wrong in that, although one wonders whether a plethora of versions of the same talk is needed. I stopped writing conference papers over a decade ago as they take a lot of time to do and I don’t think they fulfil any useful purpose. In any case such articles should not count as research publications, especially if they are not peer-reviewed (which is generally the case in Astronomy). I know this is different in other fields. In Computer Science, for example, the conference article is one of the main modes of research publication.

The more serious issue is when a researcher publishes (or tries to publish) multiple versions of the same research in different journals in an attempt to pad out their publication list by passing off old material as original research. This is difficult to do nowadays because of plagiarism detection software, but not all journals deploy such tools and some cases do get through the editorial process and make it into the journal as a publication. Sometimes this even happens with high-profile journals.

The question is how one reacts to this kind of multiple publication. I did a totally unscientific social media poll recently and the results were quite interesting. Of my respondents, about 20% said that they thought multiple publication was fine. About 30% thought that multiple publication constituted academic misconduct, and about 50% thought that it wasn’t fine but fell short of academic misconduct.

I suppose the definition of research misconduct varies from one institution to another. For reference here is what it says in Maynooth University’s Research Integrity Policy statement:

Publication of multiplier papers based on the same set(s) or sub-set(s) of data is not acceptable, except where there is full cross-referencing within the papers. An author who submits substantially similar work to more than one publisher must disclose this to the publishers at the time of submission.

The document also specifically refers to “Artificially proliferating publications” as an example of research misconduct.

In the past I would have posted a poll on here but I now have to pay $15 per month for the privilege of hosting a poll so with regret I’ve unblocked my Twitter account to let you vote there:

One reason people might be tempted to indulge in multiple publication stems from the fact that the current system of research assessment depends so much on bibliometric indicators relating to refereed publications. While I regret the emphasis on bibliometrics, I do think that multiple publication of research papers is indeed academic misconduct because artificially boosting the number of such items on one’s CV might be a way of gaming the system. It seems to me that such a strategy is unlikely to work, but I have seen people try it.

New journal ‘Philosophy of Physics’ finally launched!

Posted in Open Access, The Universe and Stuff on November 23, 2022 by telescoper

I thought quite a few readers of In the Dark might be interested that there’s a new open-access journal starting up called Philosophy of Physics. It’s published by LSE Press. See this post for more details.

wuthrich's avatarTaking up Spacetime

I am excited to report that the new open-access journal Philosophy of Physics is finally online and ready to receive submissions. The Philosophy of Physics Society, together with LSE Press who will be our publishing house, have launched the new journal today.

Thank you very much to everyone in the Governing Board and the Society who contributed to realizing our key initiative!

Special thanks go to David Wallace for having accepted to act as the journal’s founding Editor-in-Chief. Read his announcement on the LSE Press’s blog here.

Please consider submitting your best work to Philosophy of Physics. In order to do so, you should become a member of the Society. It’s free for students and unwaged people, £10 for postdocs, and £20 for others. Once you are a member, you will find instructions on how to submit a paper inside the members’ area, as explained here.

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New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , on November 10, 2022 by telescoper

I’m delighted to be able to announce the 10000th paper this year, and 1000000th publication overall, at the Open Journal of Astrophysics!

That is counting in binary, of course. In base ten the  new paper at the 16th paper in Volume 5 (2022) as well as the 64th in all.

The latest publication is entitled “Evolution of Cosmic Voids in the Schrödinger-Poisson Formalism” and the authors are Aoibhinn Gallagher and Peter Coles (Who he? Ed) both of the Department of Theoretical Physics at Maynooth University. Obviously as author I played no role in the selection of referees or any other aspect of the editorial process.

Aoibhinn Gallagher – bonus marks for pronouncing both names correctly – is my first Maynooth PhD student and this is her first paper, of many I hope (and expect)! We’re already working on extensions of this approach to other aspects of large-scale structure. You can find some discussion of this general approach here.

Anyway, here is a screen grab of the overlay which includes the  abstract:

 

You can click on the image to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

Here is a nice animated version of Figure 5 of the paper showing, for a 1D slice, the radial expansion of a spherically symmetric void (i.e. underdense region) using periodic boundary conditions:

The x-axis is in (scaled) comoving coordinates, i.e. expanding with the cosmological background, so that the global expansion is removed.  You can see that the void expands in these coordinates, so is expanding more quickly than the background, initially pushing matter into a dense ring around the rim of the empty void. That part of the evolution is just the same as for “normal” matter but in this case the wave-mechanical behaviour of the matter prevents it from being confined to a strongly-localized structure as well as affecting the subsequent expansion rate.

Of course in the real Universe, voids are not isolated like this but instead tend to push into each other, but we felt it was worth studying the single void case to understand the dynamics!

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , on November 4, 2022 by telescoper

It’s time once again for me to announce new paper at the Open Journal of Astrophysics. The new paper, published last week, is the 15th paper in Volume 5 (2022) and the 63rd in all. The latest publication is entitled “Two-photon amplitude interferometry for precision astrometry” and the authors are Paul Stankus, Andrei Nomerotski and Anže Slosar of Brookhaven National Laboratory (USA) and Stephen Vintskevich (Moscow Institute of Physics & Technology, Russia).

The paper presents a new method for doing interferometry with quantum-mechanically entangled photons and is thus is in the folder marked Instrumentation and Methods for Astrophysics. I don’t know much about this area – and there are many whose baseline opinion is that interferometry is a bit of a fringe topic that is rather complex perhaps needs more visibility in the current phase of its development  (geddit?) – but the physics looks fascinating to me. Amplitude interferometry should be contrasted with the intensity interferometry method of Hanbury Brown and Twiss which I remember learning about as an undergraduate.

Anyway, here is a screen grab of the overlay which includes the  abstract:

You can click on the image to make it larger should you wish to do so. The full image used in the overlay is this:

 

You can find the officially accepted version of the paper on the arXiv here.

Open Access Week and the arXiv

Posted in Open Access with tags , , on October 17, 2022 by telescoper

Just time for a quick post to advertise the fact that next week (commencing October 24th 2022) is International Open Access Week.

I’ll be participating in one of the events – a panel discussion – organized by arXiv as part of Open Access Week. This event is entitled Trends in Peer Review of Open Access Preprints and the description is:

Speed of research is a major feature of open access preprint platforms like arXiv – formal peer review can follow later after rapid distribution of results. However, as submissions to arXiv and other preprint servers have grown, many researchers are seeking new avenues for community feedback and peer review. At this panel discussion, leaders in preprints and peer review will discuss current trends in virtual overlay journals, open peer reviews, and more. (Video recording will be available to registrants after the event)

Panelists:

  • Peter Coles, PhD, Theoretical Cosmologist at Maynooth University in Ireland and Managing Editor of The Open Journal of Astrophysics
  • Jessica Polka, PhD, Executive Director of ASAPbio
  • Antti Mikael Rousi, PhD, Senior Advisor, Research Services at Aalto University, Finland
  • Steinn Sigurdsson, PhD, Professor of Astronomy at Penn State University and arXiv Scientific Director

The event is at on Wednesday, October 26, 2022 at 15:00 UTC /11:00 EDT; that’s 16:00 Irish Time. It’s on Zoom (unless you are at Cornell and can attend in person). You need to register here.