Archive for Covid-19

Lockdown Prolonged, Leaving Certificate Postponed

Posted in Education, Politics with tags , , , on April 10, 2020 by telescoper

I’ve just listened to the latest update on the Covid-19 situation in Ireland. One entirely predictable announcement made this afternoon was that the current restrictions on movement will continue until Tuesday May 5th at the earliest. Monday May 4th is a Bank Holiday in Ireland.

I would personally be surprised if the measures now in place were eased before June, actually, but it seems sensible to wait and see if the situation improves before making a decision on further extensions.

(Incidentally, I am keeping track of the Covid-19 numbers in Ireland on a page here.)

Another announcement made today is likely to be more controversial: that this year’s School Leaving Certificate examinations, due to start on June 3rd, will postponed until “late July or early August”.

Among many other things, this will cause those of us involved in University teaching quite a few problems to solve. A lot of thinking caps will be getting dusted off right now!

On the normal cycle, Leaving Certificate results are available in mid-August and successful students begin their University courses in mid-September.

Assuming that there is a delay of two months in sitting the exams and no time can be made up in the marking and moderation process, we’re looking at students not being able to start their courses until mid-November, just a few weeks before the normal end of the First Semester. I have heard suggestions that new students could start in October but these have not included any explanation of how to speed up the process enough to make this possible.

It seems possible to me that, because starting in November would create more problems than it would solve, new students might actually have to defer entry until January, which means in turn that their Second Semester would have to take place during the period June-August. That, in turn, will require staff to abandon any plans for summer research activity and, for some science disciplines, will involve labs being kept open when they are usually closed for upgrades.

Presumably the proposal will be that returning students will follow the usual academic year timetable, but there’s a problem there too if students have to repeat modules from the 1st year which are to be taught on a different calendar.

I’m sure that none of these problems are insoluble but I’m equally sure that the powers that be haven’t really thought about them. Ireland’s current Government does not give the impression of being that interested in universities or the staff who work in them. In recent weeks lecturers have worked exceptionally hard to switch to online teaching and assessment only to have these efforts conspicuously ignored in a recent statement by the Minister for Higher Education Mary Mitchell O’connor. No doubt the Government will again just take it for granted that we’ll sort things out on their behalf.

Assessment at a Distance

Posted in Covid-19, Education, Maynooth with tags , , , on April 4, 2020 by telescoper

In the light of the Covid-19 restrictions currently in place, Maynooth University has issued updated guidance to students about the rest of the Semester.

Of particular concern to students is what will happen to their examinations, usually held in the second half of May.

Here the guidance begins:

The university examinations will not take place this semester in the usual format. The examinations will be replaced by remote assessments, including assignments, timed remote assessments and in some cases video interviews. As far as possible assessments will be completed by the scheduled dates. We plan to have resit examinations in August as usual.

There has been a lot of work and discussion going on behind the scenes to come up with ways of doing without the usual in situ examinations and the solutions proposed will no doubt vary considerably from discipline to discipline.

In the case of Theoretical Physics the vast majority of our examinations will be in the form of a timed assessment as mentioned above. What this means is that a test of similar format to the usual examinations will be made available in the form of a pdf file for students to download at home at a specific time. They must then scan and upload their answers, within a given time limit, extra time being added to formal duration of the assessment to allow for doing this.

There are two main potential difficulties with this approach.

One is that the students will not be invigilated and may cheat, either by referring to notes or other material (e.g. online) or by colluding with others. I believe the former risk can be mitigated (a) by the time limit and (b) by designing an assessment that emphasises problem-solving rather than rote learning (which, frankly, is what we should be doing anyway). Collusion is more difficult to deal with but we can at least require students to make a declaration that the submission is their own and reserve the right to interview afterwards.

The second (and, I believe more serious) source of difficulty is on the side of the student. This approach will require students to have somewhere at home where they can do the test, as well as access to the Internet and a scanning device of some sort. They will only have to download a relatively small pdf but the upload may cause problems. A scanned pdf would be easier to upload than, for example, pictures taken using a phone camera (which may be rather large files).

Still, given that there is a period of six weeks before these assessments are due to take place, I hope the vast majority of students will be able to put appropriate arrangements in place. We can also provide a dummy test so they can check that everything works satisfactorily.

These proposals are not ideal, but few things can be in the situation we are in. I do think this is a reasonable approach for our students because at least it means they can prepare using past examination papers knowing that the timed assessment will be similar in form. I think dumping an entirely new and unfamiliar kind of assessment on students now, at a time of already high stress, would have been grossly unfair.

The 2km Limit

Posted in Biographical, Maynooth with tags , , on April 2, 2020 by telescoper

Under the Covid-19 restrictions currently in force in Ireland we’re not supposed to journey further than 2km from home.

The other day I went to the shops near me and decided to try out a helpful app that draws the 2km limit on a map.

Here’s what I got:

So it seems I can go anywhere in Maynooth without breaking the rules. Alarmingly, however, I see that if I’m not careful I could end up crossing the border from County Kildare into County Meath!

Towards the South is the famous Junction 7 on the M4 which in normal times features on the traffic news on the radio with alarming frequency because of one snarl up or another. I don’t suppose there will be much more of that for a while.

One of the pleasant side effects of the lockdown is a drastic reduction in vehicle traffic. That in turn means that I wake up to the sound of birdsong rather than car engines. That’s one part of this I’ll enjoy while it lasts.

On Boredom

Posted in Biographical, Covid-19, Television with tags , , on April 1, 2020 by telescoper

During this time of isolation and social distancing I’ve noticed how many people are posting messages on social media about being bored.

Conscious that I am in danger once again of being excluded from a popular cultural phenomenon I have been trying recently to join in this craze. Unfortunately whenever I try to experience a bit of boredom I find there is far too much to distract me.

There’s working from home, of course: lecture recordings to make, notes to prepare, assignments to correct, virtual meetings to attend, papers to write, and so on

But outside of work it’s just as difficult. Whenever I try to interrupt my day with a bit of boredom I find that there’s so much music to listen to, so many books and newspapers to read, so many crossword puzzles to solve so many other things to do, that I always get distracted and fail dismally.

Perhaps it is the fact that I don’t have a television set that makes me such a failure? It seems that there may be a strong correlation between possession of a TV and being susceptible to boredom. Perhaps if I bought one I could be more like normal people?

Anyway, never let it be said that I don’t know when I’m beaten. That is why I am asking readers of this blog for help. Could anyone who is expert in being bored please send tips on how to achieve it? I’d be quite interested in your suggestions.

Your advice through the comments box would be greatly appreciated as I fear that without it I may always remain a social outcast.

P. S. Before anyone says it: if you are yourself struggling to get bored you could try reading through the back catalogue of posts on this blog!

Bad Statistics and COVID-19

Posted in Bad Statistics, Covid-19 with tags , , , on March 27, 2020 by telescoper

It’s been a while since I posted anything in the Bad Statistics folder. That’s not as if the present Covid-19 outbreak hasn’t provided plenty of examples, it’s that I’ve had my mind on other things. I couldn’t resist, however, sharing this cracker that I found on Twitter:

The paper concerned can be found here from which the key figure is this:

This plots the basic reproductive rate R against temperature for Coronavirus infections from 100 Chinese cities. The argument is that the trend means that higher temperatures correspond to weakened transmission of the virus (as happens with influenza). I don’t know if this paper has been peer-reviewed. I sincerely hope not!

I showed this plot to a colleague of mine the other day who remarked “well, at least all the points lie on a plane”. It looks to me that if if you removed just one point – the one with R>4.5 – then the trend would vanish completely.

The alleged correlation is deeply unimpressive on its own, quite apart from the assumption that any correlation present represents a causative effect due to temperature – there could be many confounding factors.

 

P.S. Among the many hilarious responses on Twitter was this:

 

A Longer Haul

Posted in Education, Maynooth with tags , , on March 24, 2020 by telescoper

 

To nobody’s great surprise today we received official confirmation that there will be no face-to-face teaching for the rest of the semester at Maynooth University; teaching had been go on until early May. This news also made it into the Irish Independent. The previous announcement was that classes would not resume until 29th March (this Friday), now they won’t resume until the next academic year begins, in September. There will also be no in situ examinations, with all assessments being switched either to homework or remote assessments. We were pretty sure this was coming, as there is no sign yet of a reduction in the spread* of Coronavirus in Ireland, so we are as prepared as we can be for this contingency, although we now know we’re in it for a longer haul than originally announced.

Today I’ve been setting up a laboratory session for my module on Computational Physics. Instead of working in our computer lab under supervision, the students will have to work through a set of Python coding problems on their own. They’re doing numerical integration this week, by the way: being a bit old-fashioned I like to call this quadrature. The demonstrator and I will however be available (via Microsoft Teams) to deal with queries. This isn’t ideal of course but the software does allow participants to share screens, as well as audio and video chat so, I’m quite optimistic that it will work out reasonably well. I’m planning to deliver a lecture to the students on this module on Thursday which, given that the group is reasonably small, should also work reasonably well.

Update: I had a big problem uploading files to Microsoft Teams, which I couldn’t fix. I need to get that sorted out or it won’t be possible to share plots, graphs, etc. Hopefully it’s just a temporary glitch, but it’s very annoying.

My early experience with Microsoft Teams wasn’t marvellous, which led me to tweet:

I have to say though that it is perfectly functional (so far), once you get used to it. I still prefer Zoom, though.

My only other gripe is that working from home seems to have made some colleagues a little bit trigger-happy with the `ReplyAll’ button on their email.

Anyway, it seems that last night, on the wrong side of the Irish Sea, Boris Johnson finally got around to reading out the statement Emmanuel Macron dictated to him last week and the United Kingdom is finally having some form of discipline imposed. We await possible announcements of further strengthening of the restrictions already in place here in Ireland, but for the time being we carry on pretty much as before. There are few people around and about in Maynooth and many of the shops and all the pubs are closed, but it’s still possible to shop without experiencing a feeding frenzy.

On top of all that, it’s a lovely sunny day!

*I’ve put a page here tracking the daily increase in number of COVID-19 cases in Ireland.

Shopping Mad

Posted in Biographical, Covid-19, Maynooth with tags , , , , on March 22, 2020 by telescoper

Empty shelves in Asda, Swansea

I don’t know how widespread scenes like that pictured above actually are, but there seems to be a lot of panic buying and/or stockpiling going on.

Worse still are scenes like this:

Social distancing doesn’t seem to be a priority among these people.

It all seems a bit ironic to see this demonstrable lack of public-spiritedness alongside the usual rhetoric about the “Dunkirk Spirit”. With the latter in mind I’ve updated Winston Churchill’s famous wartime peroration from 1940 in a manner more suitable for the 2020s:

We shall fight in Tesco, we shall fight in Aldi and Asda, we shall fight with growing panic and growing stupidity in the aisles, we shall defend our toilet rolls, whatever the cost may be. We shall fight for the pasta, we shall fight for the hand-wash…(continued, page 94)

Anyway for what it’s worth I still haven’t noticed any shortages of food or household goods where I’m living. It may be different elsewhere of course but Maynooth is doing fine in that regard.

This is not to say I haven’t changed my shopping habits at all. I’ve never been in the habit of doing big shopping trips. I live alone, don’t have a freezer and my fridge is quite small. I tend therefore to buy bits and pieces as I need them. I prefer fresh food and, usually eating lunch in the College when I’m at work, I don’t need a main meal in the evening.

Now I’m having lunch at home every day I need to buy a bit more, which is one change. Mindful that a stricter lock down might be coming soon, I have also begun buying a few things I wouldn’t normally buy. To my usual shopping I’ve added the odd item of tinned food but never more than a can or two at a time. I also bought some powdered milk in case fresh milk becomes unavailable.

I haven’t eaten any of the tinned goods I’ve bought yet: I am still eating fresh things as they seem to be readily available. Who knows when or if that will change.

I realise my personal situation makes coping with this social distancing malarkey rather easier than most but I think certain individuals are making it even more difficult for the others with their selfish behaviour. I suppose there will always be some.

Anyway, do feel free to share your own experiences of shortages or lack thereof through the comments box.

A Note from Maynooth

Posted in Biographical, Covid-19, Education, Maynooth with tags , , , , on March 18, 2020 by telescoper

I’m indebted to colleagues from Maynooth University Special Collections & Archives for sending out the following bit of history.

It is now over 100 years ago the 1918 “Spanish ‘flu” influenza pandemic came to Maynooth College. It was officially closed from 8th November until 7th January and 60 students remained in the infirmaries. Over 500 students went home and sadly 11 of these did not survive the pandemic. More details below.

One difference between 1918 and 2020 is that the Spanish flu mainly affected the young. Covid-19 is remarkably different, as these grim mortality statistics from Italy demonstrate:

Nobody at all under the age of 30 has died (so far) of Covid-19 in Italy. It’s the mortality rate for those over 70 that is terrifying. This is just the rate so far. Many of those currently in intensive care won’t make it, so these figures will probably change significantly.

Last night the Taioseach Leo Varadkar gave an unusual address to the nation, which pointed out the gravity of the situation facing Ireland and indeed the world in genderal, which is even more serious that a century ago. In particular he stressed that the COVID-19 emergency would probably last well into the summer.

I don’t agree with Varadkar on many political issues but I think his speech last night was very good. He praised Ireland’s front line medical staff, but also found time to mention the teachers and lecturers who trying their best to deliver remote teaching. Above all, though, he was honest.

I feel very lucky right now, not only to be so far unaffected by Coronavirus but also to be living and working in a small University town in Ireland right now.

There are no obvious shortages of anything and my local (small) supermarket has put out hand wash and wipes for people to use on baskets and trolleys.

We’re also in a Study Week that has at least given us some time to figure out how to move to online teaching by next Monday when we are supposed to start again.

We are probably going to be in this for months rather than weeks but aat least we academics are in no imminent danger of losing our jobs. The same is not true for the folk working in local shops, restaurants and other businesses. We owe it to them to do what we can to support the local community and its economy as much as possible.

In particular, I’ve often remarked that we are lucky in a small town like Maynooth to have quite a few nice cafés and restaurants. Some of these have switched to takeaway or delivery mode during the emergency. I wouldn’t normally use a takeaway service but I will do now, and I suggest my colleagues and friends in Maynooth might do likewise. If we don’t support these establishments now we might lose them for good.

That goes for other local businesses too!

Public Health and Open Science – Updated

Posted in Covid-19 with tags , , , on March 16, 2020 by telescoper

Preface: I wrote this on Monday 16th March, before the release of a report from Imperial College admitting that the previous modelling was based on incorrect assumptions. Most of what I argued still stands but I have updated a few points.

–o–

The current Coronavirus outbreak is posing a great many questions not only about how governments should act but also about how they should communicate with the public. One aspect of this issue that came up last week was an open letter (now closed) asking the UK Government to release the data and models underpinning its COVID-19 strategy. In the interest of full disclosure, I didn’t sign it but only because I’m no longer based in the UK.

Although this letter received many signatures, I was very surprised by the negativity with which it was greeted from some corners of the scientific community. Those of us who work in astrophysics are of course used to open sharing of data and models being the norm. Some of us even see it as an essential component of the scientific method, so I was a bit shocked to see hostility from some other scientists. I think the reason was largely that it wouldn’t help to people without expert knowledge playing around with the data, getting hold of the wrong end of the stick, and jumping to erroneous conclusions. There is of course a danger of that, but in the absence of openness people are jumping to conclusions anyway and conspiracy theories are rife.

For what it’s worth, my view is that if governments can’t get those with scientific training on board then it has no chance with the general population. Astrophysicists, for example, at least understand what an exponential curve really means. Those of us who have a scientific background will not stop asking questions – nor, I think, should we. That’s how we view the world and for many equations and numbers are how we make sense of things.

So, undaunted by the calls that I should shut up because I’m not an expert, but prefaced by a clear admission that I am not an expert, I’m going to comment on a question that a lot of people are asking: why is the UK Government’s Coronavirus strategy so different from that adopted in other countries?

I didn’t watch the press conference last week that ignited this question, but I have listed to clips. The controversial issue is that of so-called herd immunity. Here is a quote by Sir Patrick Vallance, the UK’s chief scientific advisor:

Our aim is to try to reduce the peak, broaden the peak, not suppress it completely; also, because the vast majority of people get a mild illness, to build up some kind of herd immunity.

Now in the absence of a vaccine there isn’t going to be herd immunity in the sense that I understand it, but (as I have already said) I am not an expert. I think the key words are `some kind of’ in the above quote. What is envisaged is a large number of people getting infected, hopefully only contracting mild symptoms, but in any case subsequently acquiring immunity. It would be bad news for this line of thought if it turns out that people can be reinfected, as indeed seems to be the case.

After listening to the press briefings, however, it seems to me that this idea isn’t a key driver of the science policy and that Vallance simply used the phrase `herd immunity’ inadvisedly.

So if that’s not the reason why would the UK’s approach be so different from other countries? Again I preface this by admitting that I’m not an expert.

At the core of a public health strategy to combat a pandemic will be mathematical models of the spread of infection. I only know a little bit about these but I’d guess that most government agencies will have similar models (though there might be different choices of parameters reflecting different populations). But that’s not all the strategy will be based on. Among the other factors are:

  1. the resources available for treating infected persons; and
  2. the likely behaviour of the population (and hence the infection rate) as a result of any measures taken.
  3. A decision about what it means for a strategy to be ‘optimal’.

In the first of these the UK is clearly in a very different situation from most of the rest of the world: the National Health Service has (per capita) far fewer hospital beds and, most importantly, far fewer intensive care unit facilities than other developed nations. The latter, in any case, run at close to capacity even at normal times so the resource available is severely limited. The need to `flatten the curve’ would therefore seem to be even more pressing for the United Kingdom than in many other nations.

Update: the Imperial College report explains that previous models made unrealistically optimistic assumptions about the number of infected persons requiring critical treatment. The old strategy would have led to upwards of 250,000 deaths as the NHS would have been swamped. This was exactly what was being pointed out by ‘inexpert’ commenters on social media.

Here is a dramatic confirmation of this:

The red line represents UK current critical care capacity. No amount of ‘flattening’ will be enough to avoid the NHS being overwhelmed.

That is a difference in input, but it doesn’t explain why the UK is not taking more stringent measures on social distancing. Quite the opposite, in fact. Apparently the Government has already accepted that hospitals are going to be overrun and that things are going to be very grim indeed for a long time.

By way of support for this interpretation, Boris Johnson recently announced that the elections scheduled for May 2020 will be postponed for a whole year, rather than the six months recommended by the Electoral Commission. It is a reasonably inference that the Government does not believe that this will be anywhere near over by the end of 2020. That signals that it won’t be able to put extra resources in place on the timescale needed to deal effectively with COVID-19 as China and South Korea seem to have done.

It seems, then, that the reason for not enforcing stricter policies now is item 2 above, and it is a judgment based on behavioural psychology: that severe social distancing measures would not be effective because people would get bored or there would be widespread social unrest if folk were asked to endure them for many months. That very pessimistic view of the likely behaviour of the UK population may well be realistic but assuming it has serious implications for mortality.

My interpretation of this is that the Government thinks people won’t really pay enough attention to social distancing instructions until the body count starts to become very scary indeed which, with exponential growth leading to a doubling of cases, every 2-3 days, won’t take very long.

So that brings me the reason why I think there is no way the UK Government is going to release its modelling calculations, namely that they contain numbers for how many people are going to die over the next few months. It won’t do that because it thinks the numbers would just cause people to panic. That may be a correct call too. Those of us who work in subjects like astrophysics don’t have to worry that releasing our data and models will terrify people.

There’s also point (3) about what defines an optimal strategy, as constrained by (1) & (2). The criterion could be overall mortality, but one can imagine that a government might decide to include economic cost as well or instead. One can certainly imagine the UK Government making such a choice.

I’ll add one final comment.

Here in Ireland the HSE has increased the level of testing in recognition of the evidence that community transmission seems to be more probable than previously thought. A surge in the number of confirmed cases of COVID-19 is expected.

Meanwhile, in the United Kingdom, the National Health Service is no longer carrying out any community testing:

I suspect the reason for this is a combination of (1) and (2). Counting deaths rather than infections is arguably a more reliable indicator of the growth of the epidemic and it is certainly cheaper. Moreover, one way of keeping the numbers down to avoid frightening people is to stop counting them…

Update: As of yesterday Germany had 5813 COVID cases and had 13 deaths; Norway had 1356 cases and only 3 deaths. The UK claimed 1391 cases but 35 deaths. These numbers provide drastic evidence of undercounting cases in the UK.

A Sign of Panic Buying?

Posted in Biographical, Maynooth with tags , , , on March 15, 2020 by telescoper

The media are full of stories of people panic buying and hoarding various items, chiefly toilet tolls and hand-wash, but also food. I hadn’t seen much evidence of that in Maynooth until I noticed this sign yesterday outside the Roost:

I had no idea food shortages were so bad. I tried following the advice on the notice, but found the door a bit too chewy for my taste.

A few minutes later I was in Supervalu doing my regular Saturday shop without problems.

But seriously folks everywhere, there is absolutely no need to stockpile groceries. It won’t do you any good and it may seriously inconvenience others. There’s plenty to go round if we all behave reasonably, so show a bit of civic responsibility and think of your fellow humans!

In other words, don’t be like this:

Anyway, one thing I have been stockpiling is crosswords and I’m going to spend most of today doing them!