Archive for the Open Access Category

The Future of Diamond Open Access in Astrophysics

Posted in Biographical, Open Access with tags , , , , , , on November 17, 2024 by telescoper

The Open Journal of Astrophysics is now reasonably well established as a Diamond Open Access journal for the astrophysics community. We have published over a hundred articles so far this year at such a low cost that we can make our publications free to read and to publish. Thanks for all this is due to the volunteers on our Editorial Board, the excellent team at Maynooth University library, who have supported this project for 6 years, to the arXiv, as well of course to the authors who have chosen to publish with us.

Although we have established a good base, we’re still much smaller than the mainstream journals publishing just a few percent of their output. There is no sign of a slowdown at OJAp. Indeed there are signs that pace will pick up. I heard last week, for example, that Oxford University Press (the publisher of Monthly Notices of the Royal Astronomical Society) has decided to cancel the ‘Read-and-Publish’ agreement that allowed authors from Australian institutions to avoid APCs. I imagine we’ll get quite a few more submissions from Down Under thanks to that decision.

Nevertheless, we’ve a long way to go to catch up with the likes of A&A, MNRAS and ApJ in terms of numbers. If activity continues to grow then we will incur greater costs – our provider, Scholastica, charges us per paper. Those costs will still be smaller than regular journals, but I think it’s unfair that the expense of running a journal that serves the global astrophysics community should fall entirely on one small University in Ireland.

Expense is only one issue. I never envisaged that OJAp would be unique. It was more intended to be a proof of concept. I would like to see a range of Diamond Open Access journals offering a choice for authors and serving different sub-disciplines. Most universities nowadays have publishing operations so there could be network of federated journals, some based on arXiv and some based on other repositories. Perhaps institutions are worried about the expense but, as we have shown the actual cost, is far less than they are wasting on Article Processing Charges. I rather think it’s not the money that is the issue, just the unimaginatively risk-averse thinking in what passes these days for university management.

There are two simple – but not mutually exclusive – possibilities.

One is that astrophysics institutions club together and donate funds not only to keep OJAp going, but also to allow us to invest in improvements. A donation equivalent to the cost of just one APC for a typical journal would help us enormously. We do actually get some donations already, but more would always be welcome. In the long run, an investment in Diamond Open Access would pay back many times in savings; OJAp has already saved the worldwide community over £500,000.

The other is that other members of the community follow the lead of OJAp and set up their own journals. I wouldn’t see others as much as competitors, more as allies with community-led federated system. In the light of the OUP decision mentioned above, why don’t Australian research institutions set up their own version of OJAp? I’d be happy to discuss how to start up such a journal with anyone interested.

If you would like to discuss either of these possibilities please use the comment box below or email me here.

P.S. There is another issue concerning the future of OJAp, which is that I will be retiring in a few years, but now isn’t the time to discuss that one!

Two New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , on November 16, 2024 by telescoper

Once again it’s time for a Saturday morning update on activity at the  Open Journal of Astrophysics.  Since the last update we have published two more papers, taking  the count in Volume 7 (2024) up to 104 and the total published by OJAp up to 219.

The first paper of the most recent pair, published on November 13 2024,  in the folder Cosmology and NonGalactic Astrophysics, is “Stochastic Super-resolution of Cosmological Simulations with Denoising Diffusion Models” by Andreas Schanz, Florian List and Oliver Hahn (all based in the University of Vienna, Austria). It presents a  discussion of denoising diffusion in generative models for achieving super-resolution in simulations of cosmic large-scale structure.

Here is a screen grab of the overlay which includes the abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so.  You can find the officially accepted version of this paper on the arXiv here.

The second paper to be published this week is also in the folder marked Cosmology and NonGalactic Astrophysics. It was published on November 14 and has the title “Halo mass functions at high redshift” by Hannah O’Brennan, John A. Regan, Chris Power (*), Saoirse Ward, John Brennan, and Joe McCaffrey. Five of the six authors are colleagues of mine from the National University of Ireland, Maynooth; Chris Power (marked with a *) is from the University of Western Australia.

Here is a screen grab of the overlay which includes the abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

That concludes this week’s update. More  next week!

Four New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , , , , , , , on November 9, 2024 by telescoper

Once again it’s time for a quick update of activity at the Open Journal of Astrophysics. Since the last update a week ago we have published  four papers, which takes the count in Volume 7 (2024) up to 102 and the total published altogether by OJAp up to 217.   This means not only that we have reached a century for the year but also that so far in 2024 we have published more than double the number of papers that we published in all of 2023. I blogged about the significance of the figure 217 here.

In chronological order, the four papers published this week, with their overlays, are as follows. You can click on the images of the overlays to make them larger should you wish to do so.

First one up is “A generative model for Gaia astrometric orbit catalogs: selection functions for binary stars, giant planets, and compact object companions” by Kareem El-Badry (Caltech, USA), Casey Lam (Carnegie Observatories), Berry Holl & Jean-Louis Halbwachs (U. Geneva), Hans-Walter Rix (MPA Heidelberg, Germany), Tsevi Mazeh (Tel Aviv, Israel) and Sahar Shahaf (Weizmann Institute of Science, Israel). This one is in the folder Solar and Stellar Astrophysics. The paper presents a forward method for estimating the selection function (i.e. the probability of a system with a given set of parameters being included in a catalog). It was published on November 4th 2024.

Here is a screen grab of the overlay, which includes the abstract:

 

You can find the officially accepted version of the paper on the arXiv here.

The second paper to announce, published on 5th November 2024. is “Primordial magnetogenesis in a bouncing model with dark energy” by Marcus V. Bomfim (Rio de Janeiro, Brazil), Emmanuel Frion (Western U. Canada), Nelson Pinto-Neto (Espírito Santo, Brazil), and Sandro D. P. Vitenti (Paraná, Brazil). This paper, in the section on Cosmology and NonGalactic Astrophysics, presents a discussion of the possible generation of magnetic fields on cosmological scales by in a model involving a scalar field coupled to electromagnetism

You can see the overlay here:

 

 

 

The accepted version of this paper can be found on the arXiv here.

The third paper, published on 6th November 2024 in the folder marked Astrophysics of Galaxies, is called  “Evidence for large scale compressible turbulence in the ISM of CSWA13, a star-Forming Lensed Galaxy at z = 1.87 with outflowing wind” by Itzhak Goldman (Tel Aviv, Israel). It presents a statistical analysis of the spatial distribution and kinematics of nebular gas with discussion of the nature of the turbulence present.

Here is the overlay

 

 

The final version accepted on arXiv is here.

Last in this batch is “Star formation in the high-extinction Planck cold clump PGCC G120.69+2.66” by Anlaug Amanda Djupvik (Aarhus, Denmark), João L. Yun (Lisbon, Portugal), and Fernando Comerón (ESO, Garching, Germany). It was published on 7th November 2024 in the folder marked Astrophysics of Galaxies. The paper uses imaging and spectroscopy  information to identify sites of star formation in a molecular cloud. This is the overlay:

You can find the official accepted version on the arXiv here.

That’s all for now. I will post another update in a week.

Saving Money via Diamond Open Access

Posted in Open Access with tags , , , , , on November 7, 2024 by telescoper

This morning I published a paper at the Open Journal of Astrophysics that brought the total number of publications there to 217. That may not seem a very significant number but I’ve had it in the back of my mind for some time. Some time ago Monthly Notices of the Royal Astronomical Society (MNRAS) decided to go Gold Open Access, charging a baseline APC of £2310 per article. I know that cost is not paid directly by authors from institutions with Read and Publish agreements with Oxford University Press (the publisher ofn MNRAS) but that doesn’t mean that it’s free: funds are still siphoned off from library budgets.

Anyway, taking the indicative cost of an APC to be the £2310 charged by MNRAS – some journals charge a lot more – the fact that we have published 217 papers means we have now saved the astronomical community around 217 × £2310 which is over £500k (€600k) in APCs. The cost to us is just a few percent of that figure.

The issue of University funding is a very live one in England, in Ireland and in The Netherlands. None of the financial crises can be solved completely by moving away from APCs but there is no justification at all for continuing to hand millions per year out of a shrinking pot over to greedy publishers. Surely this is an excellent time for Higher Education Institutions collectively to make a decisive move in the direction of Diamond Open Access?

Three New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , , on November 2, 2024 by telescoper

It’s Saturday, so it’s time once again for another summary of business at the  Open Journal of Astrophysics. This week I have three papers to announce, which brings the total we have published so far this year (Vol. 7) to 98 and the total published by OJAp to 213.

First one up, published on Tuesday 29th October 2024, is “Cosmology with shear ratios: a joint study of weak lensing and spectroscopic redshift datasets” by Ni Emas & Chris Blake (Swinburne U., Australia), Rossana Ruggeri (Queensland U, Australia) and Anna Porredon (Ruhr University, Bochum, Germany). This paper is in the folder marked Cosmology and NonGalactic Astrophysics. The paper investigates the use of shear ratios as a cosmological diagnostic, with applications to lensing surveys

Here is a screen grab of the overlay, which includes the abstract:

You can read the paper directly on arXiv here.

The second paper to present, also published on Tuesday 29th October 2024, is “Echo Location: Distances to Galactic Supernovae From ASAS-SN Light Echoes and 3D Dust Maps” by Kyle D. Neumann (Penn State), Michael A. Tucker & Christopher S. Kochanek (Ohio State), Benjamin J. Shappee (U. Hawaii), and K. Z. Stanek (Ohio State), all based in the USA. This paper is in the folder marked High-Energy Astrophysical Phenomena and it presents a new approach to estimating the distance to a source by combining light echoes with recent three-dimensional dust maps with application to supernova distances.

The overlay looks like this:

 

 

You can read this paper directly on the arXiv here.

Last, but by no means least, comes  “A deconstruction of methods to derive one-point lensing statistics” by Viviane Alfradique (Universidade Federal do Rio De Janeiro, Brazil), Tiago Castro (INAF Trieste, Italy), Valerio Marra (Trieste), Miguel Quartin (Rio de Janeiro), Carlo Giocoli (INAF Bologna, Italy), and Pierluigi Monaco (Trieste).  Published in the folder marked Cosmology and NonGalactic Astrophysics, it describes a comparative study of different methods of approximating the one-point probability density function (PDF) for use in the statistical analysis of gravitational lensing.

Here is a screengrab of the overlay:

 

To read the accepted version of this on the arXiv please go here.

That’s it for this week. I hope to post another update next weekend, by when we might well have reached a century for this year!

The Scopus Horror Show

Posted in Open Access with tags , , , on October 31, 2024 by telescoper

Today being Hallowe’en, it seems an appropriate time to tell you a horror story. A few weeks ago I posted about the inaccuracy of the Scopus bibliographic database. I’ve contacted Scopus multiple times to supply them with correct data about the Open Journal of Astrophysics, but the errors persist. It seems I’ll have to take legal action to get them to correct the false and misleading information Scopus is displaying.

I was recently told about a paper with the title The museum of errors/horrors in Scopus. Written by F. Franceschini, D. Maisano & L. Mastrogiacomo and published in 2016, it demonstrates that people have known how poor Scopus is for many years. Yet still it is used.

Here is part of the abstract:

Recent studies have shown that the Scopus bibliometric database is probably less accurate than one thinks. As a further evidence of this fact, this paper presents a structured collection of several weird typologies of database errors, which can therefore be classified as horrors. Some of them concern the incorrect indexing of so-called Online-First paper, duplicate publications, and the missing/incorrect indexing of references. A crucial point is that most of these errors could probably be avoided by adopting some basic data checking systems.

DOI: 10.1016/j.joi.2015.11.006

Eight years on, there’s no sign of scopus adopting “basic data systems” but they don’t really have an incentive to improve do they? It seems the world of research assessment refuses to question the reliability of the product. Critical thinking is an alien concept to the bean counters.

P.S. Oíche Shamhna shona daoibh go léir!

Two New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , on October 26, 2024 by telescoper

It’s Saturday morning again so here’s another report on activity at the  Open Journal of Astrophysics.  Since the last update we have published two more papers, taking  the count in Volume 7 (2024) up to 95 and the total published by OJAp up to 210.  We’ve still got a few in the pipeline waiting for the final versions to appear on arXiv so I expect we’ll reach the 100 mark for 2024 in the next couple of weeks.

The first paper of the most recent pair, published on October 22 2024,  and in the folder marked Astrophysics of Galaxies, is “Cloud Collision Signatures in the Central Molecular Zone”  by Rees A. Barnes and Felix D. Priestley (Cardiff University, UK) .  This paper presents an analysis of combined hydrodynamical, chemical and radiative transfer simulations of cloud collisions in the Galactic disk and Central Molecular Zone (CMZ).

Here is a screen grab of the overlay which includes the abstract:

 

 

You can click on the image of the overlay to make it larger should you wish to do so.  You can find the officially accepted version of this paper on the arXiv here.

The second paper has the title “Partition function approach to non-Gaussian likelihoods: macrocanonical partitions and replicating Markov-chains” and was published October 25th 2024. The authors are Maximilian Philipp Herzog, Heinrich von Campe, Rebecca Maria Kuntz, Lennart Röver and Björn Malte Schäfe (all of Heidelberg University, Germany). This paper, which is in  the folder marked Cosmology and NonGalactic Astrophysics, describes a method of macrocanonical sampling for Bayesian statistical inference, based on the macrocanonical partition function, with applications to cosmology.

Here is a screen grab of the overlay which includes the abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

That concludes this week’s update. More  next week!

Open Access Week 2024: Community over Commercialization

Posted in Open Access with tags , , , , , on October 22, 2024 by telescoper

This week is Open Access Week 2024, the theme of which is Community over Commercialization. In light of this, among with some other journal editors I was contacted by Scholastica to provide some comments for their blog, Scholastica being the provider of the platform used by The Open Journal of Astrophysics. I was happy to respond to a couple of questions about how to build engaged communities.

Here are the comments of mine that they used in the blog post:

We started with a small editorial board basically formed from people who read various blog posts I’d written about the idea of the journal and followed its germination. We were lucky to have an initial group of high-profile scientists based all around the globe, including the USA. We started to get some papers from very well-known authors from leading institutes, and large international consortia. Some of these papers have generated large numbers of citations and have attracted coverage in the mainstream media, which also helped raise our profile.

Last year I was on sabbatical, which gave me the opportunity to travel and give invited talks about open access publishing in astrophysics at institutions in France, Spain, the UK, and Australia, and to audiences around the world via the Internet. Other members of the editorial board have also done their bit in promoting the journal. Our submission rate increased only slowly at first but is now more than doubling each year and we are currently receiving several submissions a day.  It has taken a while to establish the reputation of the Open Journal of Astrophysics this way, (i.e., mainly by word of mouth), but that has been good for us because it has enabled us to scale up our processes without becoming overwhelmed by a deluge.

My advice to others trying to set up a new journal would be to have a strong editorial board and clear policies, and above all to be patient. It takes a while — in our case more than 5 years — to establish a reputation in the academic community. These days there are too many people talking about this sort of publishing and not enough actually doing it. It’s time for researchers and research institutions to claim back the original purpose of academic publishing, the free dissemination of research for the public good.

You can read comments from three other editors of open access journals in the original Scholastica blog post.

Six New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , , , , , , , , , on October 19, 2024 by telescoper

It’s Saturday morning again and time to post an update of activity at the Open Journal of Astrophysics. As last week there are six papers to announce, bringing the count in Volume 7 (2024) up to 93 and the total altogether up to 208.

In chronological order, the six papers published this week, with their overlays, are as follows. You can click on the images of the overlays to make them larger should you wish to do so.

First one up, published on Monday 14th October 2024, is in the folder marked Cosmology and NonGalactic Astrophysics and is called “Backreaction in Numerical Relativity: Averaging on Newtonian gauge-like hypersurfaces in Einstein Toolkit cosmological simulations“. This paper presents a numerical study of the effect of local inhomogeneities on the dynamical evolution of the Universe, i.e. the so-called “backreaction” problem; the authors are Alexander Oestreicher and Sofie Marie Koksbang of the University of Southern Denmark, Odense, Denmark.

Here is a screen grab of the overlay, which includes the abstract:

You can find the officially accepted version of the paper on the arXiv here.

The second paper to announce, published on 15th October 2024, is “Weak-Lensing Shear-Selected Galaxy Clusters from the Hyper Suprime-Cam Subaru Strategic Program: II. Cosmological Constraints from the Cluster Abundance” by I-Non Chiu (National Cheng Kung University, Taiwan) and 11 others based in Taiwan, Japan, India and the USA. This paper, which is also in the folder Cosmology and NonGalactic Astrophysics  presents constraints on cosmological parameters obtained from a sample of galaxy clusters

You can see the overlay here:

The accepted version of this paper can be found on the arXiv here.

The third paper is “Image formation near hyperbolic umbilic in strong gravitational lensing” by Ashish Kumar Meena (Ben Gurion University, Israel) and Jasjeet Singh Bagla (IISER Mohali, India). It presents a detailed theoretical discussion of a particular form of strong gravitational lensing and its observational consequences; it is in the folder Astrophysics of Galaxies and was published on October 15th 2024.

The overlay is here:

 

The officially accepted version can be found on arXiv here.

The fourth paper, published on 16th October 2024 and in the folder Astrophysics of Galaxies,  is “Weak Gravitational Lensing around Low Surface Brightness Galaxies in the DES Year 3 Data” by N. Chicoine (University of Chicago, USA) et al. (105 authors; DES Collaboration). It presents a  demonstration of the viability of using weak gravitational lensing to constrain the halo masses of low surface brightness galaxies.

The overlay is here

 

You can find the officially accepted version of this paper here.

The fifth paper in this batch is “Imprints of interaction processes in the globular cluster system of NGC 3640” by Ana I Ennis (Waterloo, Canada) and Juan Pablo Caso & Lilia Patricia Bassino (Instituto de Astrofísica de La Plata, Argentina). This one was also published on 16th October 2024 and is in the folder Astrophysics of Galaxies, Here is the overlay

 

 

You can find the official accepted version on the arXiv here.

Finally for this week we have “On the nature of the C IV-bearing circumgalactic medium at 𝒛∼𝟏” by Suyash Kumar, Hsiao-Wen Chen, Zhijie Qu & Mandy C. Chen (U. Chicago), Fakhri S. Zahedy (U. North Texas), Sean D. Johnson (Carnegie Observatories), Sowgat Muzahid (IUCAA, India) and Sebastiano Cantalupo (U. Milan Bicocca)

The overlay is here

 

You can find the officially-accepted version on arXiv here.

That’s it for now. More next week!

The trouble with arXiv

Posted in Biographical, Open Access with tags , , , , on October 17, 2024 by telescoper

We’re now publishing papers at a steady rate at the Open Journal of Astrophysics. This is probably not obvious to outsiders, but our platform actually consists of two different sites, one handling submissions and the other dealing with publishing those papers accepted. Although we have a large (and still expanding) team of volunteer Editors to deal with the former, as Managing Editor I am the only person with the keys to the publishing side of things. This part of the process has been simplified enormously after the automation introduced earlier this year but it still takes some time to do, as I have to check the overlay and metadata before pressing the button to deposit everything with Crossref and make the overlay live. I also announce each paper on social media. This usually takes around 15 minutes per paper, give or take.

Now that I’ve returned to full teaching duties at Maynooth University, I’ve developed a routine to deal with this activity. During workdays I usually wake around 7am, make some coffee, and then check the day’s arXiv mailing to see if any of our accepted papers have been announced. If any have, I do the honours while I have my coffee, and then proceed to shower and breakfast (including Coffee no. 2); if none have, I go straight to shower and breakfast. I’ve been following this routine for quite a while now.

In the last couple of weeks, however, I have noticed quite often when I try to look up newly-announced papers on arXiv that the connection times out with a message saying ‘rate exceeded’. If that happens I just wait a while and try again. It’s not a very serious issue but it does slow down the process.

Well, today I found out the reason via a message on Mastodon. The loading errors at arXiv are caused by people doing many simultaneous downloads in attempts to scrape all the content from arXiv as soon as it is announced. This is almost certainly to provide material for Large Language Models, such as ChatGPT, which are essentially Automated Plagiarism Engines. I propose the acronym APE for the kind of person who engages in this sort of activity.

This is a very tedious development and I hope arXiv can find a way of putting a stop to it without inconveniencing its authentic users. I suggest that the people managing arXiv identify the culprits and send the boys round.