Archive for the Open Access Category

Qeios and the Nature of a Journal

Posted in Open Access with tags , , , on December 15, 2024 by telescoper

Last week I encountered, for the first time, a website called Qeios.com. This is a platform that does peer review of preprints and then posts those approved with Open Access. It also issues a DOI for approved articles. Qeios is also a member of Crossref so presumably the metadata for these articles is deposited there too.

You might think this is the same as what the Open Journal of Astrophysics does, but it is a bit different. For one thing, it is not an arXiv overlay journal so the preprints actually appear on the Qeios platform, though I suppose there’s nothing to stop authors posting on arXiv either before or after Qeios. Since most astrophysicists find their research on arXiv, the overlay concept seems more efficient than the Qeios one.

Anyway, my attention was drawn to Qeios by an astrophysicist who had been asked to review an article for Qeios that is already under consideration by OJAp. In our For Authors page there is this:

No paper should be submitted to The Open Journal of Astrophysics that is already published elsewhere or is being considered for publication by another journal.

This rule is adopted by many journals and has in the past led to authors being banned for breaking it. Apart from anything else it means that the community is not bombarded with multiple review requests for the same paper (as in the case above). There is an issue of research misconduct, the definition of which varies from one institution to another. For reference here is what it says in Maynooth University’s Research Integrity Policy statement:

Publication of multiplier papers based on the same set(s) or sub-set(s) of data is not acceptable, except where there is full cross-referencing within the papers. An author who submits substantially similar work to more than one publisher must disclose this to the publishers at the time of submission.

The document also specifically refers to “artificially proliferating publications” as an example of research misconduct. Authors whose papers do end up in multiple journals could thus find themselves in very hot water with their employers as a consequence.

Getting back to the specifics of Qeios and OJAp, however, there two questions about whether this rule applicable in this situation. One is that the preprint may have been submitted to Qeios after submission to OJAp, which means the rule as written is not violated. Authors of papers published by OJAp retain full copyright of their work so we can’t control what they do after publication, but if they try to publish it again in another journal they will fall foul of the rule there.

The other is whether Qeios counts as a “another journal” in the first place. Instead of going into the definition of what a journal is, I’ll refer you to an old post of mine in which I wrote this:

I’d say that, at least in my discipline, traditional journals are simply no longer necessary for communicating scientific research. I find all the  papers I need to do my research on the arXiv and most of my colleagues do the same. We simply don’t need old-fashioned journals anymore.  Yet we keep paying for them. It’s time for those of us who believe that  we should spend as much of our funding as we can on research instead of throwing it away on expensive and outdated methods of publication to put an end to this absurd system. We academics need to get the academic publishing industry off our backs.

The point that I have made many times is that the only thing that journals do of any importance is to organize peer-review. The publishing side of the business is simply unnecessary. Journals do not add value to an article, they just add cost. The one thing they do – peer review – is not done by them but by members of the academic community.

There is a thread on Bluesky by Ethan Vishniac (Editor-in-Chief of the Astrophysical Journal) about Qeios. There are six parts so please bear with me if I include them all to show context:

This thread is for authors of scientific papers, and particularly astronomers. I struggled a bit with how explicit I had to be, but I think including a name is important. We (meaning all the major journals) have rules against submitting a manuscript to more than one journal at a time. 1/6

— Ethan Vishniac (@ethan-vishniac.bsky.social) 2024-12-06T21:27:57.368Z

People who ignore this rule can find themselves banned from submitting papers for years. Recently we had a case where a potential referee noted that he had just been asked to review the same paper by someone else. 2/6

— Ethan Vishniac (@ethan-vishniac.bsky.social) 2024-12-06T21:27:57.369Z

I wrote the author, who was startled and explained that he had been asked to allow his preprint to be posted at Qeios.com and that he had agreed – the issue of peer review was never raised and posting a preprint is not an ethical violation. It’s a normal part of the process. 3/6

— Ethan Vishniac (@ethan-vishniac.bsky.social) 2024-12-06T21:27:57.370Z

He cc'd me the emails and I would have read it the same way. Qeios.com takes the position that they are not a journal, but a website that vets papers through peer review. The AAS journals (and as far as I know, all other professional journals) does not regard this as a meaningful distinction. 4/6

— Ethan Vishniac (@ethan-vishniac.bsky.social) 2024-12-06T21:27:57.371Z


We ban this kind of simultaneous submission in order to avoid over-burdening the community with review requests and because we do not want to encourage people to shop for a referee who will not give significant feedback. The task of reviewing a paper is time-consuming but important service. 5/6

— Ethan Vishniac (@ethan-vishniac.bsky.social) 2024-12-06T21:27:57.372Z

There is no point in participating in a process which makes this work meaningless. TDLR submit to the AAS journals, or submit to Qeios.com , or any other journal of your choice, but remember that it is a choice. Also, you can post to the ArXiv as well. It's fine. 6/6

— Ethan Vishniac (@ethan-vishniac.bsky.social) 2024-12-06T21:27:57.373Z

This thread repeats much of what I’ve said already, but I’d like to draw your attention to the 4th of these messages, which contains

Qeios.com takes the position that they are not a journal, but a website that vets papers through peer review. The AAS journals (and as far as I know, all other professional journals) does not regard this as a meaningful distinction.

I’m not sure what a journal actually is, as I think it is an outmoded concept, but I agree with Ethan Vishniac that to all intents and purposes Qeios is a journal. It has an ISSN that says as much too. On the other hand, this quote seems to me to contain a tacit acceptance that the only thing that defines a journal is that it vets papers by peer review, which is the point I made above.

Four New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , , , , on December 14, 2024 by telescoper

It’s Saturday morning once again so here’s another quick update of activity at the Open Journal of Astrophysics. Since the last update a week ago we have published  four papers, which takes the count in Volume 7 (2024) up to 114 and the total published altogether by OJAp up to 229. If we publish just one more paper between now and the end of the year, we will have published as many papers in 2024 as we have in all previous years.

Anyway, in chronological order of publication, the four papers published this week, with their overlays, are as follows. You can click on the images of the overlays to make them larger should you wish to do so.

First one up is “Star formation beyond galaxies: widespread in-situ formation of intra-cluster stars” by Niusha Ahvazi & Laura V. Sales (UC Riverside, USA), Julio F. Navarro (U. Victoria, Canada), Andrew Benson (Carnegie Obs. USA), Alessandro Boselli (Aix Marseille U., France) and Richard D’Souza (Vatican Obs.). The paper, which is in the folder marked Astrophysics of Galaxies, The paper presents a simulation-based analysis of a diffuse star forming component in galaxy clusters extending for hundreds of kiloparsecs and tracing the distribution of neutral gas in the cluster host halo.

Here is a screen grab of the overlay, which includes the abstract:

You can find the officially accepted version of the paper on the arXiv here.

The second paper to announce, published on 10th December 2024 in the folder Cosmology and NonGalactic Astrophysics, is “Cosmological Constraints from Combining Photometric Galaxy Surveys and Gravitational Wave Observatories” by E.L. Gagnon, D. Anbajagane, J. Prat, C. Chang, and J. Frieman (all of U. Chicago, USA). This article quantifies the expected cosmological information gain from combining the forecast LSST 3x2pt analysis with the large-scale auto-correlation of GW sources from proposed next-generation GW experiments.

You can see the overlay here:

The accepted version of this paper can be found on the arXiv here.

The third paper, also published on 10th December 2024, but in the folder marked Earth and Planetary Astrophysics, has the title “A potential exomoon from the predicted planet obliquity of β Pictoris b” and is written by Michael Poon, Hanno Rein, and Dang Pham all of the University of Toronto, Canada. It presents discussion, based on the β Pictoris system, of the idea that the presence of exomoons can excite misalignment between the spin and orbit axis (obliquity) in exoplanet systems

Here is the overlay

The final version accepted on arXiv is here.

Last of this quartet, published on 11th December 2024, and in the folder Cosmology and NonGalactic Astrophysics is “Map-level baryonification: Efficient modelling of higher-order correlations in the weak lensing and thermal Sunyaev-Zeldovich fields” and is by Dhayaa Anbajagane & Shivam Pandey (U. Chicago) and Chihway Chang (Columbia U.), all based in the USA.

The paper proposes an extension of the semi-analytic formalism to weak lensing and thermal Sunyaev-Zeldovich (tSZ) fields directly on the full-sky, with an emphasis on higher-order correlations. The overlay is here:

You can find the official accepted version on the arXiv here.

That’s all for this week. I’ll do another update next Saturday, and that will probably be the last one of the year. If we publish just one more paper between now and 31st December, we will have published as many papers in 2024 as we have in all previous years put together!

The Journal of Universal Rejection

Posted in Open Access on December 10, 2024 by telescoper

As (both) my regular readers know I have a strong interest in innovative publication methods, I thought I would share a very intriguing one I have just found out about:

I think this approach might help us at the Open Journal of Astrophysics cut our running costs still further. Gold Open Access journals have an incentive to publish as many papers as possible to increase revenue from Article Processing Charges, whereas we Diamond journals have an incentive in the opposite direction. This journal would appear to take that to its logical conclusion.

I think I’ll apply to be on the Editorial Board. It must be a very prestigious to bea member of the Editorial Board of a journal with such a high rejection rate!

Four New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , , on December 7, 2024 by telescoper

It’s Satuday morning once again so here’s another quick update of activity at the Open Journal of Astrophysics. Since the last update a week ago we have published  four papers, which takes the count in Volume 7 (2024) up to 110 and the total published altogether by OJAp up to 225.

In chronological order of publication, the four papers published this week, with their overlays, are as follows. You can click on the images of the overlays to make them larger should you wish to do so.

First one up is “The impact of feedback on the evolution of gas density profiles from galaxies to clusters: a universal fitting formula from the Simba suite of simulations” by Daniele Sorini & Sownak Bose (Durham University, UK), Romeel Davé (University of Edinburgh, UK), and Daniel Anglés-Alcázar (University of Connecticut, USA). The paper, which is in the folder marked Astrophysics of Galaxies, presents a study of the effects of stellar and/or AGN feedback on the shape and evolution of gas density profiles in galaxy haloes using the SIMBA simulations. It was published on Tuesday 3rd December 2024.

Here is a screen grab of the overlay, which includes the abstract:

 

You can find the officially accepted version of the paper on the arXiv here.

The second paper to announce, also published on 3rd December 2024, and is also the folder “Astrophysics of Galaxies, is “Self-regulated growth of galaxy sizes along the star-forming main sequence” by Shweta Jain (U. Kentucky, USA), Sandro Tacchella (U. Cambridge, UK) and Moein Mosleh (Shiraz University, Iran).  This paper suggestes an identification of a possible self-regulating mechanism in galaxy size growth involving the interplay between feedback from star formation and newly accreted gas.

You can see the overlay here:

 

The accepted version of this paper can be found on the arXiv here.

The third paper, published on Thursday 6th December 2024 in the folder marked Cosmology and NonGalactic Astrophysics, is called  “BLAST: Beyond Limber Angular power Spectra Toolkit. A fast and efficient algorithm for 3×2 pt analysis” by Sofia Chiarenza, Marco Bonici & Will Percival (Waterloo, Canada) and Martin White (Berkeley, USA). It presents BLAST, an efficient algorithm for calculating angular power spectra without employing the Limber approximation or assuming a scale-dependent growth rate, based on the use of Chebyshev polynomials. The code is written in Julia.

Here is the overlay

 

 

The final version accepted on arXiv is here.

Last in this batch, published on 6th December 2024, and in the folder Astrophysics of Galaxies, is “On the universality of star formation efficiency in galaxies” by Ava Polzin & Andrey V. Kravtsov (U. Chicago) and Vadim A. Semenov & Nickolay Y. Gnedin (CfA Harvard), all based in the USA. The paper presents an argument that the universality of observational estimates of star formation efficiency per free-fall time can be plausibly explained by the turbulence-driven and feedback-regulated properties of star-forming regions.

You can find the official accepted version on the arXiv here.

We seem to have recovered from a small Thanksgiving lull and, looking at the OJAp workflow, I think we’ll have a similar number of publications next week. I’ll do another update next weekend!

New Publication at the Open Journal of Astrophysics

Posted in Maynooth, OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , on November 30, 2024 by telescoper

It’s Saturday morning once again so it’s time for the usual weekly update of publications at the Open Journal of Astrophysics. This week’s report will be short because, like last week, there is only one paper to report this week, being  the 106th paper in Volume 7 (2024)  and the 221st  altogether. It was published on Thursday 28th November 2024. We have some more papers in the publishing pipeline, which I thought might appear, but they didn’t come out this week possibily because of the Thanksgiving holiday in the USA.

Anyway, The title of the latest paper is “Growth of Light-Seed Black Holes in Gas-Rich Galaxies at High Redshift” by Daxal Mehta, John Regan and Lewis Prole (all of the National University of Ireland, Maynooth*. This paper presents a discussion of the rate of growth of black holes in the early Universe on the basis of simulations run using the Arepo code.

Here is the overlay of the paper containing the abstract:

 

 

You can click on the image of the overlay to make it larger should you wish to do so. You can also find the officially accepted version of the paper on the arXiv here.

That’s all for this week – tune in next Saturday for next week’s update!

*The authors being from Maynooth, I of course recused myself from the editorial process for this article.

New Publication at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , on November 23, 2024 by telescoper

It’s Saturday morning so it’s time for the usual weekly update of publications at the Open Journal of Astrophysics. This week’s report will be short because there is only one paper to report this week, being  the 105th paper in Volume 7 (2024)  and the 220th  altogether. It was published on Wednesday 19th November 2024.

The title of the latest paper is”Early Bright Galaxies from Helium Enhancements in High-Redshift Star Clusters” and the authors are Harley Katz (U. Chicago), Alexander P. Ji (U. Chicago), Grace Telford (Princeton) & Peter Senchyna (Carnegie Observatories), all based in the USA. This paper, which is in the folder marked Astrophysics of Galaxies, discusses chemical abundance – specfically Helium enhancement – as a factor in the luminosity of high-redshift galaxies

Here is the overlay of the paper containing the abstract:

 

 

You can click on the image of the overlay to make it larger should you wish to do so. You can also find the officially accepted version of the paper on the arXiv here.

That’s all for this week – tune in next Saturday for next week’s update!

Galactic Outflows

Posted in Open Access, The Universe and Stuff with tags , , , on November 22, 2024 by telescoper

We have a visiting speaker for a colloquium this afternoon in the form of Dr Martin Rey, formerly of Oxford University and now a lecturer at the University of Bath. Last night at dinner I learned that he has a YouTube channel called Cosmic Rey (geddit?) so I thought I’d share one of the videos here.

The paper relating to this video can be found on the arXiv here.

P.S. Martin has now joined the Editorial Board of the Open Journal of Astrophysics.

The Future of Diamond Open Access in Astrophysics

Posted in Biographical, Open Access with tags , , , , , , on November 17, 2024 by telescoper

The Open Journal of Astrophysics is now reasonably well established as a Diamond Open Access journal for the astrophysics community. We have published over a hundred articles so far this year at such a low cost that we can make our publications free to read and to publish. Thanks for all this is due to the volunteers on our Editorial Board, the excellent team at Maynooth University library, who have supported this project for 6 years, to the arXiv, as well of course to the authors who have chosen to publish with us.

Although we have established a good base, we’re still much smaller than the mainstream journals publishing just a few percent of their output. There is no sign of a slowdown at OJAp. Indeed there are signs that pace will pick up. I heard last week, for example, that Oxford University Press (the publisher of Monthly Notices of the Royal Astronomical Society) has decided to cancel the ‘Read-and-Publish’ agreement that allowed authors from Australian institutions to avoid APCs. I imagine we’ll get quite a few more submissions from Down Under thanks to that decision.

Nevertheless, we’ve a long way to go to catch up with the likes of A&A, MNRAS and ApJ in terms of numbers. If activity continues to grow then we will incur greater costs – our provider, Scholastica, charges us per paper. Those costs will still be smaller than regular journals, but I think it’s unfair that the expense of running a journal that serves the global astrophysics community should fall entirely on one small University in Ireland.

Expense is only one issue. I never envisaged that OJAp would be unique. It was more intended to be a proof of concept. I would like to see a range of Diamond Open Access journals offering a choice for authors and serving different sub-disciplines. Most universities nowadays have publishing operations so there could be network of federated journals, some based on arXiv and some based on other repositories. Perhaps institutions are worried about the expense but, as we have shown the actual cost, is far less than they are wasting on Article Processing Charges. I rather think it’s not the money that is the issue, just the unimaginatively risk-averse thinking in what passes these days for university management.

There are two simple – but not mutually exclusive – possibilities.

One is that astrophysics institutions club together and donate funds not only to keep OJAp going, but also to allow us to invest in improvements. A donation equivalent to the cost of just one APC for a typical journal would help us enormously. We do actually get some donations already, but more would always be welcome. In the long run, an investment in Diamond Open Access would pay back many times in savings; OJAp has already saved the worldwide community over £500,000.

The other is that other members of the community follow the lead of OJAp and set up their own journals. I wouldn’t see others as much as competitors, more as allies with community-led federated system. In the light of the OUP decision mentioned above, why don’t Australian research institutions set up their own version of OJAp? I’d be happy to discuss how to start up such a journal with anyone interested.

If you would like to discuss either of these possibilities please use the comment box below or email me here.

P.S. There is another issue concerning the future of OJAp, which is that I will be retiring in a few years, but now isn’t the time to discuss that one!

Two New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , on November 16, 2024 by telescoper

Once again it’s time for a Saturday morning update on activity at the  Open Journal of Astrophysics.  Since the last update we have published two more papers, taking  the count in Volume 7 (2024) up to 104 and the total published by OJAp up to 219.

The first paper of the most recent pair, published on November 13 2024,  in the folder Cosmology and NonGalactic Astrophysics, is “Stochastic Super-resolution of Cosmological Simulations with Denoising Diffusion Models” by Andreas Schanz, Florian List and Oliver Hahn (all based in the University of Vienna, Austria). It presents a  discussion of denoising diffusion in generative models for achieving super-resolution in simulations of cosmic large-scale structure.

Here is a screen grab of the overlay which includes the abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so.  You can find the officially accepted version of this paper on the arXiv here.

The second paper to be published this week is also in the folder marked Cosmology and NonGalactic Astrophysics. It was published on November 14 and has the title “Halo mass functions at high redshift” by Hannah O’Brennan, John A. Regan, Chris Power (*), Saoirse Ward, John Brennan, and Joe McCaffrey. Five of the six authors are colleagues of mine from the National University of Ireland, Maynooth; Chris Power (marked with a *) is from the University of Western Australia.

Here is a screen grab of the overlay which includes the abstract:

 

You can click on the image of the overlay to make it larger should you wish to do so. You can find the officially accepted version of the paper on the arXiv here.

That concludes this week’s update. More  next week!

Four New Publications at the Open Journal of Astrophysics

Posted in OJAp Papers, Open Access, The Universe and Stuff with tags , , , , , , , , , , , , , , , , on November 9, 2024 by telescoper

Once again it’s time for a quick update of activity at the Open Journal of Astrophysics. Since the last update a week ago we have published  four papers, which takes the count in Volume 7 (2024) up to 102 and the total published altogether by OJAp up to 217.   This means not only that we have reached a century for the year but also that so far in 2024 we have published more than double the number of papers that we published in all of 2023. I blogged about the significance of the figure 217 here.

In chronological order, the four papers published this week, with their overlays, are as follows. You can click on the images of the overlays to make them larger should you wish to do so.

First one up is “A generative model for Gaia astrometric orbit catalogs: selection functions for binary stars, giant planets, and compact object companions” by Kareem El-Badry (Caltech, USA), Casey Lam (Carnegie Observatories), Berry Holl & Jean-Louis Halbwachs (U. Geneva), Hans-Walter Rix (MPA Heidelberg, Germany), Tsevi Mazeh (Tel Aviv, Israel) and Sahar Shahaf (Weizmann Institute of Science, Israel). This one is in the folder Solar and Stellar Astrophysics. The paper presents a forward method for estimating the selection function (i.e. the probability of a system with a given set of parameters being included in a catalog). It was published on November 4th 2024.

Here is a screen grab of the overlay, which includes the abstract:

 

You can find the officially accepted version of the paper on the arXiv here.

The second paper to announce, published on 5th November 2024. is “Primordial magnetogenesis in a bouncing model with dark energy” by Marcus V. Bomfim (Rio de Janeiro, Brazil), Emmanuel Frion (Western U. Canada), Nelson Pinto-Neto (Espírito Santo, Brazil), and Sandro D. P. Vitenti (Paraná, Brazil). This paper, in the section on Cosmology and NonGalactic Astrophysics, presents a discussion of the possible generation of magnetic fields on cosmological scales by in a model involving a scalar field coupled to electromagnetism

You can see the overlay here:

 

 

 

The accepted version of this paper can be found on the arXiv here.

The third paper, published on 6th November 2024 in the folder marked Astrophysics of Galaxies, is called  “Evidence for large scale compressible turbulence in the ISM of CSWA13, a star-Forming Lensed Galaxy at z = 1.87 with outflowing wind” by Itzhak Goldman (Tel Aviv, Israel). It presents a statistical analysis of the spatial distribution and kinematics of nebular gas with discussion of the nature of the turbulence present.

Here is the overlay

 

 

The final version accepted on arXiv is here.

Last in this batch is “Star formation in the high-extinction Planck cold clump PGCC G120.69+2.66” by Anlaug Amanda Djupvik (Aarhus, Denmark), João L. Yun (Lisbon, Portugal), and Fernando Comerón (ESO, Garching, Germany). It was published on 7th November 2024 in the folder marked Astrophysics of Galaxies. The paper uses imaging and spectroscopy  information to identify sites of star formation in a molecular cloud. This is the overlay:

You can find the official accepted version on the arXiv here.

That’s all for now. I will post another update in a week.